Protein Peeling

Results

announcement

19/01/2005 -new version
15/08/2005 -new help

Parameters choosen


R-value: 95

Minimal size of secondary structure: 8

Minimal size of protein unit: 16

Maximal size of protein unit: 0

Pruning tree ? No   CI cut-off:  0.2

Cut-off distance between atom: 8

Delta value in logistic function: 1.5



Hierarchical process of splitting



Tree
Contact Matrix



Visualisation of Protein units at all levels


Level 0
PU
Molecule needs Java 1.4 Structure


[1-71]:
1ikta_PU0_1-71
CI=4.57


[72-92]:
1ikta_PU0_72-92
CI=0.96


[93-115 ]:
1ikta_PU0_93-115
CI=0.08


Level 1
PU
Molecule needs Java 1.4 Structure


[1-17]:
1ikta_PU1_1-17
CI=0.00


[18-71]:
1ikta_PU1_18-71
CI=5.18


[72-92]:
1ikta_PU1_72-92
CI=0.96


[93-115 ]:
1ikta_PU1_93-115
CI=0.08


Level 2
PU
Molecule needs Java 1.4 Structure


[1-17]:
1ikta_PU2_1-17
CI=0.00


[18-55]:
1ikta_PU2_18-55
CI=4.14


[56-71]:
1ikta_PU2_56-71
CI=0.00


[72-92]:
1ikta_PU2_72-92
CI=0.96


[93-115 ]:
1ikta_PU2_93-115
CI=0.08


Final level 3

PU
Molecule needs Java 1.4 Structure


[1-17]:
1ikta_PU_1-17
CI=0.00


[18-34]:
1ikta_PU_18-34
CI=0.00


[35-55]:
1ikta_PU_35-55
CI=1.26


[56-71]:
1ikta_PU_56-71
CI=0.00


[72-92]:
1ikta_PU_72-92
CI=0.96


[93-115 ]:
1ikta_PU_93-115
CI=0.08