Protein Peeling

Results

announcement

19/01/2005 -new version
15/08/2005 -new help

Parameters choosen


R-value: 95

Minimal size of secondary structure: 8

Minimal size of protein unit: 16

Maximal size of protein unit: 0

Pruning tree ? No   CI cut-off:  0.2

Cut-off distance between atom: 8

Delta value in logistic function: 1.5



Hierarchical process of splitting



Tree
Contact Matrix



Visualisation of Protein units at all levels


Level 0
PU
Molecule needs Java 1.4 Structure


[1-70]:
1inla_PU0_1-70
CI=3.38


[71-285 ]:
1inla_PU0_71-285
CI=4.39


Level 1
PU
Molecule needs Java 1.4 Structure


[1-70]:
1inla_PU1_1-70
CI=3.38


[71-90]:
1inla_PU1_71-90
CI=0.09


[91-150]:
1inla_PU1_91-150
CI=4.07


[151-285 ]:
1inla_PU1_151-285
CI=3.30


Level 2
PU
Molecule needs Java 1.4 Structure


[1-70]:
1inla_PU2_1-70
CI=3.38


[71-90]:
1inla_PU2_71-90
CI=0.09


[91-150]:
1inla_PU2_91-150
CI=4.07


[151-243]:
1inla_PU2_151-243
CI=4.12


[244-270]:
1inla_PU2_244-270
CI=0.75


[271-285 ]:
1inla_PU2_271-285
CI=0.60


Level 3
PU
Molecule needs Java 1.4 Structure


[1-70]:
1inla_PU3_1-70
CI=3.38


[71-90]:
1inla_PU3_71-90
CI=0.09


[91-150]:
1inla_PU3_91-150
CI=4.07


[151-190]:
1inla_PU3_151-190
CI=2.29


[191-243]:
1inla_PU3_191-243
CI=3.52


[244-270]:
1inla_PU3_244-270
CI=0.75


[271-285 ]:
1inla_PU3_271-285
CI=0.60


Level 4
PU
Molecule needs Java 1.4 Structure


[1-33]:
1inla_PU4_1-33
CI=1.45


[34-70]:
1inla_PU4_34-70
CI=3.79


[71-90]:
1inla_PU4_71-90
CI=0.09


[91-150]:
1inla_PU4_91-150
CI=4.07


[151-190]:
1inla_PU4_151-190
CI=2.29


[191-243]:
1inla_PU4_191-243
CI=3.52


[244-270]:
1inla_PU4_244-270
CI=0.75


[271-285 ]:
1inla_PU4_271-285
CI=0.60


Level 5
PU
Molecule needs Java 1.4 Structure


[1-33]:
1inla_PU5_1-33
CI=1.45


[34-51]:
1inla_PU5_34-51
CI=2.50


[52-70]:
1inla_PU5_52-70
CI=2.08


[71-90]:
1inla_PU5_71-90
CI=0.09


[91-150]:
1inla_PU5_91-150
CI=4.07


[151-190]:
1inla_PU5_151-190
CI=2.29


[191-243]:
1inla_PU5_191-243
CI=3.52


[244-270]:
1inla_PU5_244-270
CI=0.75


[271-285 ]:
1inla_PU5_271-285
CI=0.60


Level 6
PU
Molecule needs Java 1.4 Structure


[1-33]:
1inla_PU6_1-33
CI=1.45


[34-51]:
1inla_PU6_34-51
CI=2.50


[52-70]:
1inla_PU6_52-70
CI=2.08


[71-90]:
1inla_PU6_71-90
CI=0.09


[91-150]:
1inla_PU6_91-150
CI=4.07


[151-190]:
1inla_PU6_151-190
CI=2.29


[191-207]:
1inla_PU6_191-207
CI=0.76


[208-243]:
1inla_PU6_208-243
CI=2.86


[244-270]:
1inla_PU6_244-270
CI=0.75


[271-285 ]:
1inla_PU6_271-285
CI=0.60


Level 7
PU
Molecule needs Java 1.4 Structure


[1-33]:
1inla_PU7_1-33
CI=1.45


[34-51]:
1inla_PU7_34-51
CI=2.50


[52-70]:
1inla_PU7_52-70
CI=2.08


[71-90]:
1inla_PU7_71-90
CI=0.09


[91-119]:
1inla_PU7_91-119
CI=2.60


[120-150]:
1inla_PU7_120-150
CI=1.08


[151-190]:
1inla_PU7_151-190
CI=2.29


[191-207]:
1inla_PU7_191-207
CI=0.76


[208-243]:
1inla_PU7_208-243
CI=2.86


[244-270]:
1inla_PU7_244-270
CI=0.75


[271-285 ]:
1inla_PU7_271-285
CI=0.60


Level 8
PU
Molecule needs Java 1.4 Structure


[1-33]:
1inla_PU8_1-33
CI=1.45


[34-51]:
1inla_PU8_34-51
CI=2.50


[52-70]:
1inla_PU8_52-70
CI=2.08


[71-90]:
1inla_PU8_71-90
CI=0.09


[91-119]:
1inla_PU8_91-119
CI=2.60


[120-150]:
1inla_PU8_120-150
CI=1.08


[151-190]:
1inla_PU8_151-190
CI=2.29


[191-207]:
1inla_PU8_191-207
CI=0.76


[208-224]:
1inla_PU8_208-224
CI=0.64


[225-243]:
1inla_PU8_225-243
CI=0.39


[244-270]:
1inla_PU8_244-270
CI=0.75


[271-285 ]:
1inla_PU8_271-285
CI=0.60


Final level 9

PU
Molecule needs Java 1.4 Structure


[1-33]:
1inla_PU_1-33
CI=1.45


[34-51]:
1inla_PU_34-51
CI=2.50


[52-70]:
1inla_PU_52-70
CI=2.08


[71-90]:
1inla_PU_71-90
CI=0.09


[91-119]:
1inla_PU_91-119
CI=2.60


[120-150]:
1inla_PU_120-150
CI=1.08


[151-170]:
1inla_PU_151-170
CI=0.00


[171-190]:
1inla_PU_171-190
CI=0.17


[191-207]:
1inla_PU_191-207
CI=0.76


[208-224]:
1inla_PU_208-224
CI=0.64


[225-243]:
1inla_PU_225-243
CI=0.39


[244-270]:
1inla_PU_244-270
CI=0.75


[271-285 ]:
1inla_PU_271-285
CI=0.60