Protein Peeling

Results

announcement

19/01/2005 -new version
15/08/2005 -new help

Parameters choosen


R-value: 95

Minimal size of secondary structure: 8

Minimal size of protein unit: 16

Maximal size of protein unit: 0

Pruning tree ? No   CI cut-off:  0.2

Cut-off distance between atom: 8

Delta value in logistic function: 1.5



Hierarchical process of splitting



Tree
Contact Matrix



Visualisation of Protein units at all levels


Level 0
PU
Molecule needs Java 1.4 Structure


[1-358]:
1ioma_PU0_1-358
CI=3.05


[359-374 ]:
1ioma_PU0_359-374
CI=0.00


Level 1
PU
Molecule needs Java 1.4 Structure


[1-219]:
1ioma_PU1_1-219
CI=2.36


[220-324]:
1ioma_PU1_220-324
CI=2.07


[325-358]:
1ioma_PU1_325-358
CI=0.00


[359-374 ]:
1ioma_PU1_359-374
CI=0.00


Level 2
PU
Molecule needs Java 1.4 Structure


[1-63]:
1ioma_PU2_1-63
CI=1.76


[64-172]:
1ioma_PU2_64-172
CI=1.74


[173-219]:
1ioma_PU2_173-219
CI=1.49


[220-324]:
1ioma_PU2_220-324
CI=2.07


[325-358]:
1ioma_PU2_325-358
CI=0.00


[359-374 ]:
1ioma_PU2_359-374
CI=0.00


Level 3
PU
Molecule needs Java 1.4 Structure


[1-63]:
1ioma_PU3_1-63
CI=1.76


[64-172]:
1ioma_PU3_64-172
CI=1.74


[173-219]:
1ioma_PU3_173-219
CI=1.49


[220-324]:
1ioma_PU3_220-324
CI=2.07


[325-341]:
1ioma_PU3_325-341
CI=0.00


[342-358]:
1ioma_PU3_342-358
CI=0.00


[359-374 ]:
1ioma_PU3_359-374
CI=0.00


Level 4
PU
Molecule needs Java 1.4 Structure


[1-63]:
1ioma_PU4_1-63
CI=1.76


[64-142]:
1ioma_PU4_64-142
CI=1.13


[143-172]:
1ioma_PU4_143-172
CI=1.55


[173-219]:
1ioma_PU4_173-219
CI=1.49


[220-324]:
1ioma_PU4_220-324
CI=2.07


[325-341]:
1ioma_PU4_325-341
CI=0.00


[342-358]:
1ioma_PU4_342-358
CI=0.00


[359-374 ]:
1ioma_PU4_359-374
CI=0.00


Level 5
PU
Molecule needs Java 1.4 Structure


[1-63]:
1ioma_PU5_1-63
CI=1.76


[64-100]:
1ioma_PU5_64-100
CI=0.25


[101-119]:
1ioma_PU5_101-119
CI=0.19


[120-142]:
1ioma_PU5_120-142
CI=0.48


[143-172]:
1ioma_PU5_143-172
CI=1.55


[173-219]:
1ioma_PU5_173-219
CI=1.49


[220-324]:
1ioma_PU5_220-324
CI=2.07


[325-341]:
1ioma_PU5_325-341
CI=0.00


[342-358]:
1ioma_PU5_342-358
CI=0.00


[359-374 ]:
1ioma_PU5_359-374
CI=0.00


Level 6
PU
Molecule needs Java 1.4 Structure


[1-63]:
1ioma_PU6_1-63
CI=1.76


[64-82]:
1ioma_PU6_64-82
CI=0.00


[83-100]:
1ioma_PU6_83-100
CI=0.19


[101-119]:
1ioma_PU6_101-119
CI=0.19


[120-142]:
1ioma_PU6_120-142
CI=0.48


[143-172]:
1ioma_PU6_143-172
CI=1.55


[173-219]:
1ioma_PU6_173-219
CI=1.49


[220-324]:
1ioma_PU6_220-324
CI=2.07


[325-341]:
1ioma_PU6_325-341
CI=0.00


[342-358]:
1ioma_PU6_342-358
CI=0.00


[359-374 ]:
1ioma_PU6_359-374
CI=0.00


Level 7
PU
Molecule needs Java 1.4 Structure


[1-26]:
1ioma_PU7_1-26
CI=0.73


[27-63]:
1ioma_PU7_27-63
CI=1.37


[64-82]:
1ioma_PU7_64-82
CI=0.00


[83-100]:
1ioma_PU7_83-100
CI=0.19


[101-119]:
1ioma_PU7_101-119
CI=0.19


[120-142]:
1ioma_PU7_120-142
CI=0.48


[143-172]:
1ioma_PU7_143-172
CI=1.55


[173-219]:
1ioma_PU7_173-219
CI=1.49


[220-324]:
1ioma_PU7_220-324
CI=2.07


[325-341]:
1ioma_PU7_325-341
CI=0.00


[342-358]:
1ioma_PU7_342-358
CI=0.00


[359-374 ]:
1ioma_PU7_359-374
CI=0.00


Final level 8

PU
Molecule needs Java 1.4 Structure


[1-26]:
1ioma_PU_1-26
CI=0.73


[27-63]:
1ioma_PU_27-63
CI=1.37


[64-82]:
1ioma_PU_64-82
CI=0.00


[83-100]:
1ioma_PU_83-100
CI=0.19


[101-119]:
1ioma_PU_101-119
CI=0.19


[120-142]:
1ioma_PU_120-142
CI=0.48


[143-172]:
1ioma_PU_143-172
CI=1.55


[173-219]:
1ioma_PU_173-219
CI=1.49


[220-266]:
1ioma_PU_220-266
CI=0.56


[267-282]:
1ioma_PU_267-282
CI=0.00


[283-324]:
1ioma_PU_283-324
CI=0.49


[325-341]:
1ioma_PU_325-341
CI=0.00


[342-358]:
1ioma_PU_342-358
CI=0.00


[359-374 ]:
1ioma_PU_359-374
CI=0.00