Protein Peeling

Results

announcement

19/01/2005 -new version
15/08/2005 -new help

Parameters choosen


R-value: 95

Minimal size of secondary structure: 8

Minimal size of protein unit: 16

Maximal size of protein unit: 0

Pruning tree ? No   CI cut-off:  0.2

Cut-off distance between atom: 8

Delta value in logistic function: 1.5



Hierarchical process of splitting



Tree
Contact Matrix



Visualisation of Protein units at all levels


Level 0
PU
Molecule needs Java 1.4 Structure


[1-112]:
1iow0_PU0_1-112
CI=3.42


[113-182]:
1iow0_PU0_113-182
CI=3.26


[183-306 ]:
1iow0_PU0_183-306
CI=3.16


Level 1
PU
Molecule needs Java 1.4 Structure


[1-96]:
1iow0_PU1_1-96
CI=3.84


[97-112]:
1iow0_PU1_97-112
CI=0.46


[113-182]:
1iow0_PU1_113-182
CI=3.26


[183-306 ]:
1iow0_PU1_183-306
CI=3.16


Level 2
PU
Molecule needs Java 1.4 Structure


[1-96]:
1iow0_PU2_1-96
CI=3.84


[97-112]:
1iow0_PU2_97-112
CI=0.46


[113-182]:
1iow0_PU2_113-182
CI=3.26


[183-204]:
1iow0_PU2_183-204
CI=1.87


[205-223]:
1iow0_PU2_205-223
CI=0.69


[224-306 ]:
1iow0_PU2_224-306
CI=1.64


Level 3
PU
Molecule needs Java 1.4 Structure


[1-96]:
1iow0_PU3_1-96
CI=3.84


[97-112]:
1iow0_PU3_97-112
CI=0.46


[113-182]:
1iow0_PU3_113-182
CI=3.26


[183-204]:
1iow0_PU3_183-204
CI=1.87


[205-223]:
1iow0_PU3_205-223
CI=0.69


[224-275]:
1iow0_PU3_224-275
CI=1.58


[276-306 ]:
1iow0_PU3_276-306
CI=0.97


Level 4
PU
Molecule needs Java 1.4 Structure


[1-96]:
1iow0_PU4_1-96
CI=3.84


[97-112]:
1iow0_PU4_97-112
CI=0.46


[113-182]:
1iow0_PU4_113-182
CI=3.26


[183-204]:
1iow0_PU4_183-204
CI=1.87


[205-223]:
1iow0_PU4_205-223
CI=0.69


[224-240]:
1iow0_PU4_224-240
CI=0.21


[241-275]:
1iow0_PU4_241-275
CI=2.16


[276-306 ]:
1iow0_PU4_276-306
CI=0.97


Level 5
PU
Molecule needs Java 1.4 Structure


[1-67]:
1iow0_PU5_1-67
CI=3.96


[68-96]:
1iow0_PU5_68-96
CI=2.01


[97-112]:
1iow0_PU5_97-112
CI=0.46


[113-182]:
1iow0_PU5_113-182
CI=3.26


[183-204]:
1iow0_PU5_183-204
CI=1.87


[205-223]:
1iow0_PU5_205-223
CI=0.69


[224-240]:
1iow0_PU5_224-240
CI=0.21


[241-275]:
1iow0_PU5_241-275
CI=2.16


[276-306 ]:
1iow0_PU5_276-306
CI=0.97


Level 6
PU
Molecule needs Java 1.4 Structure


[1-67]:
1iow0_PU6_1-67
CI=3.96


[68-96]:
1iow0_PU6_68-96
CI=2.01


[97-112]:
1iow0_PU6_97-112
CI=0.46


[113-138]:
1iow0_PU6_113-138
CI=0.43


[139-182]:
1iow0_PU6_139-182
CI=3.44


[183-204]:
1iow0_PU6_183-204
CI=1.87


[205-223]:
1iow0_PU6_205-223
CI=0.69


[224-240]:
1iow0_PU6_224-240
CI=0.21


[241-275]:
1iow0_PU6_241-275
CI=2.16


[276-306 ]:
1iow0_PU6_276-306
CI=0.97


Level 7
PU
Molecule needs Java 1.4 Structure


[1-23]:
1iow0_PU7_1-23
CI=1.23


[24-39]:
1iow0_PU7_24-39
CI=1.01


[40-67]:
1iow0_PU7_40-67
CI=0.20


[68-96]:
1iow0_PU7_68-96
CI=2.01


[97-112]:
1iow0_PU7_97-112
CI=0.46


[113-138]:
1iow0_PU7_113-138
CI=0.43


[139-182]:
1iow0_PU7_139-182
CI=3.44


[183-204]:
1iow0_PU7_183-204
CI=1.87


[205-223]:
1iow0_PU7_205-223
CI=0.69


[224-240]:
1iow0_PU7_224-240
CI=0.21


[241-275]:
1iow0_PU7_241-275
CI=2.16


[276-306 ]:
1iow0_PU7_276-306
CI=0.97


Level 8
PU
Molecule needs Java 1.4 Structure


[1-23]:
1iow0_PU8_1-23
CI=1.23


[24-39]:
1iow0_PU8_24-39
CI=1.01


[40-67]:
1iow0_PU8_40-67
CI=0.20


[68-96]:
1iow0_PU8_68-96
CI=2.01


[97-112]:
1iow0_PU8_97-112
CI=0.46


[113-138]:
1iow0_PU8_113-138
CI=0.43


[139-182]:
1iow0_PU8_139-182
CI=3.44


[183-204]:
1iow0_PU8_183-204
CI=1.87


[205-223]:
1iow0_PU8_205-223
CI=0.69


[224-240]:
1iow0_PU8_224-240
CI=0.21


[241-259]:
1iow0_PU8_241-259
CI=0.38


[260-275]:
1iow0_PU8_260-275
CI=0.35


[276-306 ]:
1iow0_PU8_276-306
CI=0.97


Final level 9

PU
Molecule needs Java 1.4 Structure


[1-23]:
1iow0_PU_1-23
CI=1.23


[24-39]:
1iow0_PU_24-39
CI=1.01


[40-67]:
1iow0_PU_40-67
CI=0.20


[68-96]:
1iow0_PU_68-96
CI=2.01


[97-112]:
1iow0_PU_97-112
CI=0.46


[113-138]:
1iow0_PU_113-138
CI=0.43


[139-163]:
1iow0_PU_139-163
CI=1.96


[164-182]:
1iow0_PU_164-182
CI=0.48


[183-204]:
1iow0_PU_183-204
CI=1.87


[205-223]:
1iow0_PU_205-223
CI=0.69


[224-240]:
1iow0_PU_224-240
CI=0.21


[241-259]:
1iow0_PU_241-259
CI=0.38


[260-275]:
1iow0_PU_260-275
CI=0.35


[276-306 ]:
1iow0_PU_276-306
CI=0.97