Protein Peeling

Results

announcement

19/01/2005 -new version
15/08/2005 -new help

Parameters choosen


R-value: 95

Minimal size of secondary structure: 8

Minimal size of protein unit: 16

Maximal size of protein unit: 0

Pruning tree ? No   CI cut-off:  0.2

Cut-off distance between atom: 8

Delta value in logistic function: 1.5



Hierarchical process of splitting



Tree
Contact Matrix



Visualisation of Protein units at all levels


Level 0
PU
Molecule needs Java 1.4 Structure


[1-16]:
1iq6a_PU0_1-16
CI=0.00


[17-52]:
1iq6a_PU0_17-52
CI=2.26


[53-132 ]:
1iq6a_PU0_53-132
CI=4.88


Level 1
PU
Molecule needs Java 1.4 Structure


[1-16]:
1iq6a_PU1_1-16
CI=0.00


[17-52]:
1iq6a_PU1_17-52
CI=2.26


[53-79]:
1iq6a_PU1_53-79
CI=0.89


[80-124]:
1iq6a_PU1_80-124
CI=3.63


[125-132 ]:
1iq6a_PU1_125-132
CI=0.00


Level 2
PU
Molecule needs Java 1.4 Structure


[1-16]:
1iq6a_PU2_1-16
CI=0.00


[17-36]:
1iq6a_PU2_17-36
CI=1.02


[37-52]:
1iq6a_PU2_37-52
CI=0.93


[53-79]:
1iq6a_PU2_53-79
CI=0.89


[80-124]:
1iq6a_PU2_80-124
CI=3.63


[125-132 ]:
1iq6a_PU2_125-132
CI=0.00


Final level 3

PU
Molecule needs Java 1.4 Structure


[1-16]:
1iq6a_PU_1-16
CI=0.00


[17-36]:
1iq6a_PU_17-36
CI=1.02


[37-52]:
1iq6a_PU_37-52
CI=0.93


[53-79]:
1iq6a_PU_53-79
CI=0.89


[80-96]:
1iq6a_PU_80-96
CI=0.00


[97-124]:
1iq6a_PU_97-124
CI=2.51


[125-132 ]:
1iq6a_PU_125-132
CI=0.00