Protein Peeling

Results

announcement

19/01/2005 -new version
15/08/2005 -new help

Parameters choosen


R-value: 95

Minimal size of secondary structure: 8

Minimal size of protein unit: 16

Maximal size of protein unit: 0

Pruning tree ? No   CI cut-off:  0.2

Cut-off distance between atom: 8

Delta value in logistic function: 1.5



Hierarchical process of splitting



Tree
Contact Matrix



Visualisation of Protein units at all levels


Level 0
PU
Molecule needs Java 1.4 Structure


[1-16]:
1irdb_PU0_1-16
CI=0.00


[17-64]:
1irdb_PU0_17-64
CI=2.39


[65-141 ]:
1irdb_PU0_65-141
CI=1.66


Level 1
PU
Molecule needs Java 1.4 Structure


[1-16]:
1irdb_PU1_1-16
CI=0.00


[17-64]:
1irdb_PU1_17-64
CI=2.39


[65-99]:
1irdb_PU1_65-99
CI=0.69


[100-126]:
1irdb_PU1_100-126
CI=0.35


[127-141 ]:
1irdb_PU1_127-141
CI=0.11


Final level 2

PU
Molecule needs Java 1.4 Structure


[1-16]:
1irdb_PU_1-16
CI=0.00


[17-44]:
1irdb_PU_17-44
CI=0.21


[45-64]:
1irdb_PU_45-64
CI=0.83


[65-99]:
1irdb_PU_65-99
CI=0.69


[100-126]:
1irdb_PU_100-126
CI=0.35


[127-141 ]:
1irdb_PU_127-141
CI=0.11