Protein Peeling

Results

announcement

19/01/2005 -new version
15/08/2005 -new help

Parameters choosen


R-value: 95

Minimal size of secondary structure: 8

Minimal size of protein unit: 16

Maximal size of protein unit: 0

Pruning tree ? No   CI cut-off:  0.2

Cut-off distance between atom: 8

Delta value in logistic function: 1.5



Hierarchical process of splitting



Tree
Contact Matrix



Visualisation of Protein units at all levels


Level 0
PU
Molecule needs Java 1.4 Structure


[1-352]:
1itua_PU0_1-352
CI=5.01


[353-369 ]:
1itua_PU0_353-369
CI=0.53


Level 1
PU
Molecule needs Java 1.4 Structure


[1-218]:
1itua_PU1_1-218
CI=4.15


[219-329]:
1itua_PU1_219-329
CI=3.78


[330-352]:
1itua_PU1_330-352
CI=0.00


[353-369 ]:
1itua_PU1_353-369
CI=0.53


Level 2
PU
Molecule needs Java 1.4 Structure


[1-124]:
1itua_PU2_1-124
CI=3.12


[125-218]:
1itua_PU2_125-218
CI=4.06


[219-329]:
1itua_PU2_219-329
CI=3.78


[330-352]:
1itua_PU2_330-352
CI=0.00


[353-369 ]:
1itua_PU2_353-369
CI=0.53


Level 3
PU
Molecule needs Java 1.4 Structure


[1-67]:
1itua_PU3_1-67
CI=2.10


[68-83]:
1itua_PU3_68-83
CI=0.68


[84-124]:
1itua_PU3_84-124
CI=1.95


[125-218]:
1itua_PU3_125-218
CI=4.06


[219-329]:
1itua_PU3_219-329
CI=3.78


[330-352]:
1itua_PU3_330-352
CI=0.00


[353-369 ]:
1itua_PU3_353-369
CI=0.53


Level 4
PU
Molecule needs Java 1.4 Structure


[1-21]:
1itua_PU4_1-21
CI=0.00


[22-57]:
1itua_PU4_22-57
CI=1.26


[58-67]:
1itua_PU4_58-67
CI=0.00


[68-83]:
1itua_PU4_68-83
CI=0.68


[84-124]:
1itua_PU4_84-124
CI=1.95


[125-218]:
1itua_PU4_125-218
CI=4.06


[219-329]:
1itua_PU4_219-329
CI=3.78


[330-352]:
1itua_PU4_330-352
CI=0.00


[353-369 ]:
1itua_PU4_353-369
CI=0.53


Level 5
PU
Molecule needs Java 1.4 Structure


[1-21]:
1itua_PU5_1-21
CI=0.00


[22-41]:
1itua_PU5_22-41
CI=0.92


[42-57]:
1itua_PU5_42-57
CI=1.15


[58-67]:
1itua_PU5_58-67
CI=0.00


[68-83]:
1itua_PU5_68-83
CI=0.68


[84-124]:
1itua_PU5_84-124
CI=1.95


[125-218]:
1itua_PU5_125-218
CI=4.06


[219-329]:
1itua_PU5_219-329
CI=3.78


[330-352]:
1itua_PU5_330-352
CI=0.00


[353-369 ]:
1itua_PU5_353-369
CI=0.53


Level 6
PU
Molecule needs Java 1.4 Structure


[1-21]:
1itua_PU6_1-21
CI=0.00


[22-41]:
1itua_PU6_22-41
CI=0.92


[42-57]:
1itua_PU6_42-57
CI=1.15


[58-67]:
1itua_PU6_58-67
CI=0.00


[68-83]:
1itua_PU6_68-83
CI=0.68


[84-124]:
1itua_PU6_84-124
CI=1.95


[125-218]:
1itua_PU6_125-218
CI=4.06


[219-297]:
1itua_PU6_219-297
CI=4.21


[298-329]:
1itua_PU6_298-329
CI=0.52


[330-352]:
1itua_PU6_330-352
CI=0.00


[353-369 ]:
1itua_PU6_353-369
CI=0.53


Level 7
PU
Molecule needs Java 1.4 Structure


[1-21]:
1itua_PU7_1-21
CI=0.00


[22-41]:
1itua_PU7_22-41
CI=0.92


[42-57]:
1itua_PU7_42-57
CI=1.15


[58-67]:
1itua_PU7_58-67
CI=0.00


[68-83]:
1itua_PU7_68-83
CI=0.68


[84-101]:
1itua_PU7_84-101
CI=0.40


[102-124]:
1itua_PU7_102-124
CI=1.46


[125-218]:
1itua_PU7_125-218
CI=4.06


[219-297]:
1itua_PU7_219-297
CI=4.21


[298-329]:
1itua_PU7_298-329
CI=0.52


[330-352]:
1itua_PU7_330-352
CI=0.00


[353-369 ]:
1itua_PU7_353-369
CI=0.53


Level 8
PU
Molecule needs Java 1.4 Structure


[1-21]:
1itua_PU8_1-21
CI=0.00


[22-41]:
1itua_PU8_22-41
CI=0.92


[42-57]:
1itua_PU8_42-57
CI=1.15


[58-67]:
1itua_PU8_58-67
CI=0.00


[68-83]:
1itua_PU8_68-83
CI=0.68


[84-101]:
1itua_PU8_84-101
CI=0.40


[102-124]:
1itua_PU8_102-124
CI=1.46


[125-148]:
1itua_PU8_125-148
CI=0.70


[149-218]:
1itua_PU8_149-218
CI=3.60


[219-297]:
1itua_PU8_219-297
CI=4.21


[298-329]:
1itua_PU8_298-329
CI=0.52


[330-352]:
1itua_PU8_330-352
CI=0.00


[353-369 ]:
1itua_PU8_353-369
CI=0.53


Level 9
PU
Molecule needs Java 1.4 Structure


[1-21]:
1itua_PU9_1-21
CI=0.00


[22-41]:
1itua_PU9_22-41
CI=0.92


[42-57]:
1itua_PU9_42-57
CI=1.15


[58-67]:
1itua_PU9_58-67
CI=0.00


[68-83]:
1itua_PU9_68-83
CI=0.68


[84-101]:
1itua_PU9_84-101
CI=0.40


[102-124]:
1itua_PU9_102-124
CI=1.46


[125-148]:
1itua_PU9_125-148
CI=0.70


[149-176]:
1itua_PU9_149-176
CI=2.55


[177-194]:
1itua_PU9_177-194
CI=0.20


[195-218]:
1itua_PU9_195-218
CI=1.25


[219-297]:
1itua_PU9_219-297
CI=4.21


[298-329]:
1itua_PU9_298-329
CI=0.52


[330-352]:
1itua_PU9_330-352
CI=0.00


[353-369 ]:
1itua_PU9_353-369
CI=0.53


Final level 10

PU
Molecule needs Java 1.4 Structure


[1-21]:
1itua_PU_1-21
CI=0.00


[22-41]:
1itua_PU_22-41
CI=0.92


[42-57]:
1itua_PU_42-57
CI=1.15


[58-67]:
1itua_PU_58-67
CI=0.00


[68-83]:
1itua_PU_68-83
CI=0.68


[84-101]:
1itua_PU_84-101
CI=0.40


[102-124]:
1itua_PU_102-124
CI=1.46


[125-148]:
1itua_PU_125-148
CI=0.70


[149-176]:
1itua_PU_149-176
CI=2.55


[177-194]:
1itua_PU_177-194
CI=0.20


[195-218]:
1itua_PU_195-218
CI=1.25


[219-251]:
1itua_PU_219-251
CI=1.86


[252-269]:
1itua_PU_252-269
CI=1.23


[270-297]:
1itua_PU_270-297
CI=0.47


[298-329]:
1itua_PU_298-329
CI=0.52


[330-352]:
1itua_PU_330-352
CI=0.00


[353-369 ]:
1itua_PU_353-369
CI=0.53