Protein Peeling

Results

announcement

19/01/2005 -new version
15/08/2005 -new help

Parameters choosen


R-value: 95

Minimal size of secondary structure: 8

Minimal size of protein unit: 16

Maximal size of protein unit: 0

Pruning tree ? No   CI cut-off:  0.2

Cut-off distance between atom: 8

Delta value in logistic function: 1.5



Hierarchical process of splitting



Tree
Contact Matrix



Visualisation of Protein units at all levels


Level 0
PU
Molecule needs Java 1.4 Structure


[1-25]:
1iuaa_PU0_1-25
CI=0.97


[26-41]:
1iuaa_PU0_26-41
CI=1.15


[42-83 ]:
1iuaa_PU0_42-83
CI=3.92


Final level 1

PU
Molecule needs Java 1.4 Structure


[1-25]:
1iuaa_PU_1-25
CI=0.97


[26-41]:
1iuaa_PU_26-41
CI=1.15


[42-60]:
1iuaa_PU_42-60
CI=1.46


[61-83 ]:
1iuaa_PU_61-83
CI=0.25