Protein Peeling

Results

announcement

19/01/2005 -new version
15/08/2005 -new help

Parameters choosen


R-value: 95

Minimal size of secondary structure: 8

Minimal size of protein unit: 16

Maximal size of protein unit: 0

Pruning tree ? No   CI cut-off:  0.2

Cut-off distance between atom: 8

Delta value in logistic function: 1.5



Hierarchical process of splitting



Tree
Contact Matrix



Visualisation of Protein units at all levels


Level 0
PU
Molecule needs Java 1.4 Structure


[1-57]:
1iuja_PU0_1-57
CI=2.98


[58-81]:
1iuja_PU0_58-81
CI=0.16


[82-102 ]:
1iuja_PU0_82-102
CI=0.00


Final level 1

PU
Molecule needs Java 1.4 Structure


[1-16]:
1iuja_PU_1-16
CI=0.00


[17-33]:
1iuja_PU_17-33
CI=0.00


[34-57]:
1iuja_PU_34-57
CI=2.91


[58-81]:
1iuja_PU_58-81
CI=0.16


[82-102 ]:
1iuja_PU_82-102
CI=0.00