Protein Peeling

Results

announcement

19/01/2005 -new version
15/08/2005 -new help

Parameters choosen


R-value: 95

Minimal size of secondary structure: 8

Minimal size of protein unit: 16

Maximal size of protein unit: 0

Pruning tree ? No   CI cut-off:  0.2

Cut-off distance between atom: 8

Delta value in logistic function: 1.5



Hierarchical process of splitting



Tree
Contact Matrix



Visualisation of Protein units at all levels


Level 0
PU
Molecule needs Java 1.4 Structure


[1-131]:
1iupa_PU0_1-131
CI=4.92


[132-199]:
1iupa_PU0_132-199
CI=1.68


[200-271 ]:
1iupa_PU0_200-271
CI=2.44


Level 1
PU
Molecule needs Java 1.4 Structure


[1-131]:
1iupa_PU1_1-131
CI=4.92


[132-199]:
1iupa_PU1_132-199
CI=1.68


[200-250]:
1iupa_PU1_200-250
CI=2.87


[251-271 ]:
1iupa_PU1_251-271
CI=0.35


Level 2
PU
Molecule needs Java 1.4 Structure


[1-131]:
1iupa_PU2_1-131
CI=4.92


[132-147]:
1iupa_PU2_132-147
CI=0.00


[148-175]:
1iupa_PU2_148-175
CI=1.53


[176-199]:
1iupa_PU2_176-199
CI=0.31


[200-250]:
1iupa_PU2_200-250
CI=2.87


[251-271 ]:
1iupa_PU2_251-271
CI=0.35


Level 3
PU
Molecule needs Java 1.4 Structure


[1-73]:
1iupa_PU3_1-73
CI=4.44


[74-131]:
1iupa_PU3_74-131
CI=3.04


[132-147]:
1iupa_PU3_132-147
CI=0.00


[148-175]:
1iupa_PU3_148-175
CI=1.53


[176-199]:
1iupa_PU3_176-199
CI=0.31


[200-250]:
1iupa_PU3_200-250
CI=2.87


[251-271 ]:
1iupa_PU3_251-271
CI=0.35


Level 4
PU
Molecule needs Java 1.4 Structure


[1-73]:
1iupa_PU4_1-73
CI=4.44


[74-92]:
1iupa_PU4_74-92
CI=0.00


[93-131]:
1iupa_PU4_93-131
CI=3.57


[132-147]:
1iupa_PU4_132-147
CI=0.00


[148-175]:
1iupa_PU4_148-175
CI=1.53


[176-199]:
1iupa_PU4_176-199
CI=0.31


[200-250]:
1iupa_PU4_200-250
CI=2.87


[251-271 ]:
1iupa_PU4_251-271
CI=0.35


Level 5
PU
Molecule needs Java 1.4 Structure


[1-20]:
1iupa_PU5_1-20
CI=2.14


[21-57]:
1iupa_PU5_21-57
CI=3.08


[58-73]:
1iupa_PU5_58-73
CI=1.03


[74-92]:
1iupa_PU5_74-92
CI=0.00


[93-131]:
1iupa_PU5_93-131
CI=3.57


[132-147]:
1iupa_PU5_132-147
CI=0.00


[148-175]:
1iupa_PU5_148-175
CI=1.53


[176-199]:
1iupa_PU5_176-199
CI=0.31


[200-250]:
1iupa_PU5_200-250
CI=2.87


[251-271 ]:
1iupa_PU5_251-271
CI=0.35


Level 6
PU
Molecule needs Java 1.4 Structure


[1-20]:
1iupa_PU6_1-20
CI=2.14


[21-57]:
1iupa_PU6_21-57
CI=3.08


[58-73]:
1iupa_PU6_58-73
CI=1.03


[74-92]:
1iupa_PU6_74-92
CI=0.00


[93-131]:
1iupa_PU6_93-131
CI=3.57


[132-147]:
1iupa_PU6_132-147
CI=0.00


[148-175]:
1iupa_PU6_148-175
CI=1.53


[176-199]:
1iupa_PU6_176-199
CI=0.31


[200-218]:
1iupa_PU6_200-218
CI=0.00


[219-250]:
1iupa_PU6_219-250
CI=1.86


[251-271 ]:
1iupa_PU6_251-271
CI=0.35


Level 7
PU
Molecule needs Java 1.4 Structure


[1-20]:
1iupa_PU7_1-20
CI=2.14


[21-41]:
1iupa_PU7_21-41
CI=1.06


[42-57]:
1iupa_PU7_42-57
CI=0.56


[58-73]:
1iupa_PU7_58-73
CI=1.03


[74-92]:
1iupa_PU7_74-92
CI=0.00


[93-131]:
1iupa_PU7_93-131
CI=3.57


[132-147]:
1iupa_PU7_132-147
CI=0.00


[148-175]:
1iupa_PU7_148-175
CI=1.53


[176-199]:
1iupa_PU7_176-199
CI=0.31


[200-218]:
1iupa_PU7_200-218
CI=0.00


[219-250]:
1iupa_PU7_219-250
CI=1.86


[251-271 ]:
1iupa_PU7_251-271
CI=0.35


Final level 8

PU
Molecule needs Java 1.4 Structure


[1-20]:
1iupa_PU_1-20
CI=2.14


[21-41]:
1iupa_PU_21-41
CI=1.06


[42-57]:
1iupa_PU_42-57
CI=0.56


[58-73]:
1iupa_PU_58-73
CI=1.03


[74-92]:
1iupa_PU_74-92
CI=0.00


[93-109]:
1iupa_PU_93-109
CI=0.65


[110-131]:
1iupa_PU_110-131
CI=0.51


[132-147]:
1iupa_PU_132-147
CI=0.00


[148-175]:
1iupa_PU_148-175
CI=1.53


[176-199]:
1iupa_PU_176-199
CI=0.31


[200-218]:
1iupa_PU_200-218
CI=0.00


[219-250]:
1iupa_PU_219-250
CI=1.86


[251-271 ]:
1iupa_PU_251-271
CI=0.35