Protein Peeling

Results

announcement

19/01/2005 -new version
15/08/2005 -new help

Parameters choosen


R-value: 95

Minimal size of secondary structure: 8

Minimal size of protein unit: 16

Maximal size of protein unit: 0

Pruning tree ? No   CI cut-off:  0.2

Cut-off distance between atom: 8

Delta value in logistic function: 1.5



Hierarchical process of splitting



Tree
Contact Matrix



Visualisation of Protein units at all levels


Level 0
PU
Molecule needs Java 1.4 Structure


[1-43]:
1iv3a_PU0_1-43
CI=4.09


[44-88]:
1iv3a_PU0_44-88
CI=1.39


[89-150 ]:
1iv3a_PU0_89-150
CI=3.39


Level 1
PU
Molecule needs Java 1.4 Structure


[1-43]:
1iv3a_PU1_1-43
CI=4.09


[44-88]:
1iv3a_PU1_44-88
CI=1.39


[89-104]:
1iv3a_PU1_89-104
CI=0.00


[105-121]:
1iv3a_PU1_105-121
CI=0.10


[122-150 ]:
1iv3a_PU1_122-150
CI=0.00


Level 2
PU
Molecule needs Java 1.4 Structure


[1-43]:
1iv3a_PU2_1-43
CI=4.09


[44-69]:
1iv3a_PU2_44-69
CI=1.22


[70-88]:
1iv3a_PU2_70-88
CI=0.00


[89-104]:
1iv3a_PU2_89-104
CI=0.00


[105-121]:
1iv3a_PU2_105-121
CI=0.10


[122-150 ]:
1iv3a_PU2_122-150
CI=0.00


Final level 3

PU
Molecule needs Java 1.4 Structure


[1-18]:
1iv3a_PU_1-18
CI=0.10


[19-43]:
1iv3a_PU_19-43
CI=1.13


[44-69]:
1iv3a_PU_44-69
CI=1.22


[70-88]:
1iv3a_PU_70-88
CI=0.00


[89-104]:
1iv3a_PU_89-104
CI=0.00


[105-121]:
1iv3a_PU_105-121
CI=0.10


[122-150 ]:
1iv3a_PU_122-150
CI=0.00