Protein Peeling

Results

announcement

19/01/2005 -new version
15/08/2005 -new help

Parameters choosen


R-value: 95

Minimal size of secondary structure: 8

Minimal size of protein unit: 16

Maximal size of protein unit: 0

Pruning tree ? No   CI cut-off:  0.2

Cut-off distance between atom: 8

Delta value in logistic function: 1.5



Hierarchical process of splitting



Tree
Contact Matrix



Visualisation of Protein units at all levels


Level 0
PU
Molecule needs Java 1.4 Structure


[1-76]:
1ixh0_PU0_1-76
CI=3.39


[77-254]:
1ixh0_PU0_77-254
CI=4.93


[255-321 ]:
1ixh0_PU0_255-321
CI=1.80


Level 1
PU
Molecule needs Java 1.4 Structure


[1-76]:
1ixh0_PU1_1-76
CI=3.39


[77-254]:
1ixh0_PU1_77-254
CI=4.93


[255-277]:
1ixh0_PU1_255-277
CI=0.24


[278-304]:
1ixh0_PU1_278-304
CI=0.62


[305-321 ]:
1ixh0_PU1_305-321
CI=1.85


Level 2
PU
Molecule needs Java 1.4 Structure


[1-57]:
1ixh0_PU2_1-57
CI=4.34


[58-76]:
1ixh0_PU2_58-76
CI=0.38


[77-254]:
1ixh0_PU2_77-254
CI=4.93


[255-277]:
1ixh0_PU2_255-277
CI=0.24


[278-304]:
1ixh0_PU2_278-304
CI=0.62


[305-321 ]:
1ixh0_PU2_305-321
CI=1.85


Level 3
PU
Molecule needs Java 1.4 Structure


[1-57]:
1ixh0_PU3_1-57
CI=4.34


[58-76]:
1ixh0_PU3_58-76
CI=0.38


[77-209]:
1ixh0_PU3_77-209
CI=4.52


[210-254]:
1ixh0_PU3_210-254
CI=3.14


[255-277]:
1ixh0_PU3_255-277
CI=0.24


[278-304]:
1ixh0_PU3_278-304
CI=0.62


[305-321 ]:
1ixh0_PU3_305-321
CI=1.85


Level 4
PU
Molecule needs Java 1.4 Structure


[1-57]:
1ixh0_PU4_1-57
CI=4.34


[58-76]:
1ixh0_PU4_58-76
CI=0.38


[77-137]:
1ixh0_PU4_77-137
CI=1.57


[138-169]:
1ixh0_PU4_138-169
CI=2.24


[170-209]:
1ixh0_PU4_170-209
CI=1.71


[210-254]:
1ixh0_PU4_210-254
CI=3.14


[255-277]:
1ixh0_PU4_255-277
CI=0.24


[278-304]:
1ixh0_PU4_278-304
CI=0.62


[305-321 ]:
1ixh0_PU4_305-321
CI=1.85


Level 5
PU
Molecule needs Java 1.4 Structure


[1-57]:
1ixh0_PU5_1-57
CI=4.34


[58-76]:
1ixh0_PU5_58-76
CI=0.38


[77-92]:
1ixh0_PU5_77-92
CI=0.00


[93-129]:
1ixh0_PU5_93-129
CI=1.74


[130-137]:
1ixh0_PU5_130-137
CI=0.00


[138-169]:
1ixh0_PU5_138-169
CI=2.24


[170-209]:
1ixh0_PU5_170-209
CI=1.71


[210-254]:
1ixh0_PU5_210-254
CI=3.14


[255-277]:
1ixh0_PU5_255-277
CI=0.24


[278-304]:
1ixh0_PU5_278-304
CI=0.62


[305-321 ]:
1ixh0_PU5_305-321
CI=1.85


Level 6
PU
Molecule needs Java 1.4 Structure


[1-57]:
1ixh0_PU6_1-57
CI=4.34


[58-76]:
1ixh0_PU6_58-76
CI=0.38


[77-92]:
1ixh0_PU6_77-92
CI=0.00


[93-109]:
1ixh0_PU6_93-109
CI=0.21


[110-129]:
1ixh0_PU6_110-129
CI=1.69


[130-137]:
1ixh0_PU6_130-137
CI=0.00


[138-169]:
1ixh0_PU6_138-169
CI=2.24


[170-209]:
1ixh0_PU6_170-209
CI=1.71


[210-254]:
1ixh0_PU6_210-254
CI=3.14


[255-277]:
1ixh0_PU6_255-277
CI=0.24


[278-304]:
1ixh0_PU6_278-304
CI=0.62


[305-321 ]:
1ixh0_PU6_305-321
CI=1.85


Level 7
PU
Molecule needs Java 1.4 Structure


[1-16]:
1ixh0_PU7_1-16
CI=0.00


[17-34]:
1ixh0_PU7_17-34
CI=1.12


[35-57]:
1ixh0_PU7_35-57
CI=2.19


[58-76]:
1ixh0_PU7_58-76
CI=0.38


[77-92]:
1ixh0_PU7_77-92
CI=0.00


[93-109]:
1ixh0_PU7_93-109
CI=0.21


[110-129]:
1ixh0_PU7_110-129
CI=1.69


[130-137]:
1ixh0_PU7_130-137
CI=0.00


[138-169]:
1ixh0_PU7_138-169
CI=2.24


[170-209]:
1ixh0_PU7_170-209
CI=1.71


[210-254]:
1ixh0_PU7_210-254
CI=3.14


[255-277]:
1ixh0_PU7_255-277
CI=0.24


[278-304]:
1ixh0_PU7_278-304
CI=0.62


[305-321 ]:
1ixh0_PU7_305-321
CI=1.85


Level 8
PU
Molecule needs Java 1.4 Structure


[1-16]:
1ixh0_PU8_1-16
CI=0.00


[17-34]:
1ixh0_PU8_17-34
CI=1.12


[35-57]:
1ixh0_PU8_35-57
CI=2.19


[58-76]:
1ixh0_PU8_58-76
CI=0.38


[77-92]:
1ixh0_PU8_77-92
CI=0.00


[93-109]:
1ixh0_PU8_93-109
CI=0.21


[110-129]:
1ixh0_PU8_110-129
CI=1.69


[130-137]:
1ixh0_PU8_130-137
CI=0.00


[138-169]:
1ixh0_PU8_138-169
CI=2.24


[170-188]:
1ixh0_PU8_170-188
CI=0.77


[189-209]:
1ixh0_PU8_189-209
CI=0.26


[210-254]:
1ixh0_PU8_210-254
CI=3.14


[255-277]:
1ixh0_PU8_255-277
CI=0.24


[278-304]:
1ixh0_PU8_278-304
CI=0.62


[305-321 ]:
1ixh0_PU8_305-321
CI=1.85


Final level 9

PU
Molecule needs Java 1.4 Structure


[1-16]:
1ixh0_PU_1-16
CI=0.00


[17-34]:
1ixh0_PU_17-34
CI=1.12


[35-57]:
1ixh0_PU_35-57
CI=2.19


[58-76]:
1ixh0_PU_58-76
CI=0.38


[77-92]:
1ixh0_PU_77-92
CI=0.00


[93-109]:
1ixh0_PU_93-109
CI=0.21


[110-129]:
1ixh0_PU_110-129
CI=1.69


[130-137]:
1ixh0_PU_130-137
CI=0.00


[138-169]:
1ixh0_PU_138-169
CI=2.24


[170-188]:
1ixh0_PU_170-188
CI=0.77


[189-209]:
1ixh0_PU_189-209
CI=0.26


[210-226]:
1ixh0_PU_210-226
CI=0.33


[227-254]:
1ixh0_PU_227-254
CI=2.02


[255-277]:
1ixh0_PU_255-277
CI=0.24


[278-304]:
1ixh0_PU_278-304
CI=0.62


[305-321 ]:
1ixh0_PU_305-321
CI=1.85