Protein Peeling

Results

announcement

19/01/2005 -new version
15/08/2005 -new help

Parameters choosen


R-value: 95

Minimal size of secondary structure: 8

Minimal size of protein unit: 16

Maximal size of protein unit: 0

Pruning tree ? No   CI cut-off:  0.2

Cut-off distance between atom: 8

Delta value in logistic function: 1.5



Hierarchical process of splitting



Tree
Contact Matrix



Visualisation of Protein units at all levels


Level 0
PU
Molecule needs Java 1.4 Structure


[1-32]:
1ixla_PU0_1-32
CI=2.31


[33-48]:
1ixla_PU0_33-48
CI=0.81


[49-127 ]:
1ixla_PU0_49-127
CI=4.89


Level 1
PU
Molecule needs Java 1.4 Structure


[1-32]:
1ixla_PU1_1-32
CI=2.31


[33-48]:
1ixla_PU1_33-48
CI=0.81


[49-68]:
1ixla_PU1_49-68
CI=0.18


[69-117]:
1ixla_PU1_69-117
CI=4.25


[118-127 ]:
1ixla_PU1_118-127
CI=0.00


Final level 2

PU
Molecule needs Java 1.4 Structure


[1-32]:
1ixla_PU_1-32
CI=2.31


[33-48]:
1ixla_PU_33-48
CI=0.81


[49-68]:
1ixla_PU_49-68
CI=0.18


[69-85]:
1ixla_PU_69-85
CI=0.00


[86-117]:
1ixla_PU_86-117
CI=3.64


[118-127 ]:
1ixla_PU_118-127
CI=0.00