Protein Peeling

Results

announcement

19/01/2005 -new version
15/08/2005 -new help

Parameters choosen


R-value: 95

Minimal size of secondary structure: 8

Minimal size of protein unit: 16

Maximal size of protein unit: 0

Pruning tree ? No   CI cut-off:  0.2

Cut-off distance between atom: 8

Delta value in logistic function: 1.5



Hierarchical process of splitting



Tree
Contact Matrix



Visualisation of Protein units at all levels


Level 0
PU
Molecule needs Java 1.4 Structure


[1-123]:
1iyea_PU0_1-123
CI=3.79


[124-285]:
1iyea_PU0_124-285
CI=4.75


[286-304 ]:
1iyea_PU0_286-304
CI=0.86


Level 1
PU
Molecule needs Java 1.4 Structure


[1-123]:
1iyea_PU1_1-123
CI=3.79


[124-140]:
1iyea_PU1_124-140
CI=0.21


[141-192]:
1iyea_PU1_141-192
CI=3.09


[193-285]:
1iyea_PU1_193-285
CI=3.88


[286-304 ]:
1iyea_PU1_286-304
CI=0.86


Level 2
PU
Molecule needs Java 1.4 Structure


[1-33]:
1iyea_PU2_1-33
CI=1.32


[34-77]:
1iyea_PU2_34-77
CI=1.56


[78-123]:
1iyea_PU2_78-123
CI=2.38


[124-140]:
1iyea_PU2_124-140
CI=0.21


[141-192]:
1iyea_PU2_141-192
CI=3.09


[193-285]:
1iyea_PU2_193-285
CI=3.88


[286-304 ]:
1iyea_PU2_286-304
CI=0.86


Level 3
PU
Molecule needs Java 1.4 Structure


[1-17]:
1iyea_PU3_1-17
CI=2.27


[18-33]:
1iyea_PU3_18-33
CI=0.23


[34-77]:
1iyea_PU3_34-77
CI=1.56


[78-123]:
1iyea_PU3_78-123
CI=2.38


[124-140]:
1iyea_PU3_124-140
CI=0.21


[141-192]:
1iyea_PU3_141-192
CI=3.09


[193-285]:
1iyea_PU3_193-285
CI=3.88


[286-304 ]:
1iyea_PU3_286-304
CI=0.86


Level 4
PU
Molecule needs Java 1.4 Structure


[1-17]:
1iyea_PU4_1-17
CI=2.27


[18-33]:
1iyea_PU4_18-33
CI=0.23


[34-50]:
1iyea_PU4_34-50
CI=1.96


[51-77]:
1iyea_PU4_51-77
CI=0.76


[78-123]:
1iyea_PU4_78-123
CI=2.38


[124-140]:
1iyea_PU4_124-140
CI=0.21


[141-192]:
1iyea_PU4_141-192
CI=3.09


[193-285]:
1iyea_PU4_193-285
CI=3.88


[286-304 ]:
1iyea_PU4_286-304
CI=0.86


Level 5
PU
Molecule needs Java 1.4 Structure


[1-17]:
1iyea_PU5_1-17
CI=2.27


[18-33]:
1iyea_PU5_18-33
CI=0.23


[34-50]:
1iyea_PU5_34-50
CI=1.96


[51-77]:
1iyea_PU5_51-77
CI=0.76


[78-123]:
1iyea_PU5_78-123
CI=2.38


[124-140]:
1iyea_PU5_124-140
CI=0.21


[141-192]:
1iyea_PU5_141-192
CI=3.09


[193-238]:
1iyea_PU5_193-238
CI=2.45


[239-285]:
1iyea_PU5_239-285
CI=2.39


[286-304 ]:
1iyea_PU5_286-304
CI=0.86


Level 6
PU
Molecule needs Java 1.4 Structure


[1-17]:
1iyea_PU6_1-17
CI=2.27


[18-33]:
1iyea_PU6_18-33
CI=0.23


[34-50]:
1iyea_PU6_34-50
CI=1.96


[51-77]:
1iyea_PU6_51-77
CI=0.76


[78-123]:
1iyea_PU6_78-123
CI=2.38


[124-140]:
1iyea_PU6_124-140
CI=0.21


[141-167]:
1iyea_PU6_141-167
CI=1.10


[168-192]:
1iyea_PU6_168-192
CI=2.47


[193-238]:
1iyea_PU6_193-238
CI=2.45


[239-285]:
1iyea_PU6_239-285
CI=2.39


[286-304 ]:
1iyea_PU6_286-304
CI=0.86


Level 7
PU
Molecule needs Java 1.4 Structure


[1-17]:
1iyea_PU7_1-17
CI=2.27


[18-33]:
1iyea_PU7_18-33
CI=0.23


[34-50]:
1iyea_PU7_34-50
CI=1.96


[51-77]:
1iyea_PU7_51-77
CI=0.76


[78-123]:
1iyea_PU7_78-123
CI=2.38


[124-140]:
1iyea_PU7_124-140
CI=0.21


[141-167]:
1iyea_PU7_141-167
CI=1.10


[168-192]:
1iyea_PU7_168-192
CI=2.47


[193-238]:
1iyea_PU7_193-238
CI=2.45


[239-269]:
1iyea_PU7_239-269
CI=1.83


[270-285]:
1iyea_PU7_270-285
CI=0.00


[286-304 ]:
1iyea_PU7_286-304
CI=0.86


Level 8
PU
Molecule needs Java 1.4 Structure


[1-17]:
1iyea_PU8_1-17
CI=2.27


[18-33]:
1iyea_PU8_18-33
CI=0.23


[34-50]:
1iyea_PU8_34-50
CI=1.96


[51-77]:
1iyea_PU8_51-77
CI=0.76


[78-123]:
1iyea_PU8_78-123
CI=2.38


[124-140]:
1iyea_PU8_124-140
CI=0.21


[141-167]:
1iyea_PU8_141-167
CI=1.10


[168-192]:
1iyea_PU8_168-192
CI=2.47


[193-219]:
1iyea_PU8_193-219
CI=1.74


[220-238]:
1iyea_PU8_220-238
CI=0.38


[239-269]:
1iyea_PU8_239-269
CI=1.83


[270-285]:
1iyea_PU8_270-285
CI=0.00


[286-304 ]:
1iyea_PU8_286-304
CI=0.86


Final level 9

PU
Molecule needs Java 1.4 Structure


[1-17]:
1iyea_PU_1-17
CI=2.27


[18-33]:
1iyea_PU_18-33
CI=0.23


[34-50]:
1iyea_PU_34-50
CI=1.96


[51-77]:
1iyea_PU_51-77
CI=0.76


[78-98]:
1iyea_PU_78-98
CI=0.26


[99-123]:
1iyea_PU_99-123
CI=0.67


[124-140]:
1iyea_PU_124-140
CI=0.21


[141-167]:
1iyea_PU_141-167
CI=1.10


[168-192]:
1iyea_PU_168-192
CI=2.47


[193-219]:
1iyea_PU_193-219
CI=1.74


[220-238]:
1iyea_PU_220-238
CI=0.38


[239-269]:
1iyea_PU_239-269
CI=1.83


[270-285]:
1iyea_PU_270-285
CI=0.00


[286-304 ]:
1iyea_PU_286-304
CI=0.86