Protein Peeling

Results

announcement

19/01/2005 -new version
15/08/2005 -new help

Parameters choosen


R-value: 95

Minimal size of secondary structure: 8

Minimal size of protein unit: 16

Maximal size of protein unit: 0

Pruning tree ? No   CI cut-off:  0.2

Cut-off distance between atom: 8

Delta value in logistic function: 1.5



Hierarchical process of splitting



Tree
Contact Matrix



Visualisation of Protein units at all levels


Level 0
PU
Molecule needs Java 1.4 Structure


[1-72]:
1iyha_PU0_1-72
CI=2.68


[73-180]:
1iyha_PU0_73-180
CI=1.85


[181-198 ]:
1iyha_PU0_181-198
CI=0.21


Level 1
PU
Molecule needs Java 1.4 Structure


[1-72]:
1iyha_PU1_1-72
CI=2.68


[73-99]:
1iyha_PU1_73-99
CI=0.34


[100-123]:
1iyha_PU1_100-123
CI=0.69


[124-180]:
1iyha_PU1_124-180
CI=1.57


[181-198 ]:
1iyha_PU1_181-198
CI=0.21


Level 2
PU
Molecule needs Java 1.4 Structure


[1-72]:
1iyha_PU2_1-72
CI=2.68


[73-99]:
1iyha_PU2_73-99
CI=0.34


[100-123]:
1iyha_PU2_100-123
CI=0.69


[124-149]:
1iyha_PU2_124-149
CI=1.01


[150-180]:
1iyha_PU2_150-180
CI=0.73


[181-198 ]:
1iyha_PU2_181-198
CI=0.21


Final level 3

PU
Molecule needs Java 1.4 Structure


[1-27]:
1iyha_PU_1-27
CI=0.40


[28-49]:
1iyha_PU_28-49
CI=0.17


[50-72]:
1iyha_PU_50-72
CI=1.40


[73-99]:
1iyha_PU_73-99
CI=0.34


[100-123]:
1iyha_PU_100-123
CI=0.69


[124-149]:
1iyha_PU_124-149
CI=1.01


[150-180]:
1iyha_PU_150-180
CI=0.73


[181-198 ]:
1iyha_PU_181-198
CI=0.21