Protein Peeling

Results

announcement

19/01/2005 -new version
15/08/2005 -new help

Parameters choosen


R-value: 95

Minimal size of secondary structure: 8

Minimal size of protein unit: 16

Maximal size of protein unit: 0

Pruning tree ? No   CI cut-off:  0.2

Cut-off distance between atom: 8

Delta value in logistic function: 1.5



Hierarchical process of splitting



Tree
Contact Matrix



Visualisation of Protein units at all levels


Level 0
PU
Molecule needs Java 1.4 Structure


[1-34]:
1izma_PU0_1-34
CI=0.49


[35-80]:
1izma_PU0_35-80
CI=0.70


[81-168 ]:
1izma_PU0_81-168
CI=1.38


Level 1
PU
Molecule needs Java 1.4 Structure


[1-34]:
1izma_PU1_1-34
CI=0.49


[35-53]:
1izma_PU1_35-53
CI=0.97


[54-80]:
1izma_PU1_54-80
CI=0.49


[81-168 ]:
1izma_PU1_81-168
CI=1.38


Level 2
PU
Molecule needs Java 1.4 Structure


[1-18]:
1izma_PU2_1-18
CI=0.50


[19-34]:
1izma_PU2_19-34
CI=0.00


[35-53]:
1izma_PU2_35-53
CI=0.97


[54-80]:
1izma_PU2_54-80
CI=0.49


[81-168 ]:
1izma_PU2_81-168
CI=1.38


Level 3
PU
Molecule needs Java 1.4 Structure


[1-18]:
1izma_PU3_1-18
CI=0.50


[19-34]:
1izma_PU3_19-34
CI=0.00


[35-53]:
1izma_PU3_35-53
CI=0.97


[54-80]:
1izma_PU3_54-80
CI=0.49


[81-97]:
1izma_PU3_81-97
CI=0.98


[98-136]:
1izma_PU3_98-136
CI=1.25


[137-168 ]:
1izma_PU3_137-168
CI=0.00


Final level 4

PU
Molecule needs Java 1.4 Structure


[1-18]:
1izma_PU_1-18
CI=0.50


[19-34]:
1izma_PU_19-34
CI=0.00


[35-53]:
1izma_PU_35-53
CI=0.97


[54-80]:
1izma_PU_54-80
CI=0.49


[81-97]:
1izma_PU_81-97
CI=0.98


[98-117]:
1izma_PU_98-117
CI=0.36


[118-136]:
1izma_PU_118-136
CI=0.00


[137-168 ]:
1izma_PU_137-168
CI=0.00