Protein Peeling

Results

announcement

19/01/2005 -new version
15/08/2005 -new help

Parameters choosen


R-value: 95

Minimal size of secondary structure: 8

Minimal size of protein unit: 16

Maximal size of protein unit: 0

Pruning tree ? No   CI cut-off:  0.2

Cut-off distance between atom: 8

Delta value in logistic function: 1.5



Hierarchical process of splitting



Tree
Contact Matrix



Visualisation of Protein units at all levels


Level 0
PU
Molecule needs Java 1.4 Structure


[1-46]:
1j0pa_PU0_1-46
CI=1.62


[47-108 ]:
1j0pa_PU0_47-108
CI=3.00


Level 1
PU
Molecule needs Java 1.4 Structure


[1-27]:
1j0pa_PU1_1-27
CI=1.95


[28-46]:
1j0pa_PU1_28-46
CI=1.07


[47-108 ]:
1j0pa_PU1_47-108
CI=3.00


Level 2
PU
Molecule needs Java 1.4 Structure


[1-27]:
1j0pa_PU2_1-27
CI=1.95


[28-46]:
1j0pa_PU2_28-46
CI=1.07


[47-70]:
1j0pa_PU2_47-70
CI=3.28


[71-108 ]:
1j0pa_PU2_71-108
CI=2.25


Final level 3

PU
Molecule needs Java 1.4 Structure


[1-27]:
1j0pa_PU_1-27
CI=1.95


[28-46]:
1j0pa_PU_28-46
CI=1.07


[47-70]:
1j0pa_PU_47-70
CI=3.28


[71-87]:
1j0pa_PU_71-87
CI=1.53


[88-108 ]:
1j0pa_PU_88-108
CI=1.94