Protein Peeling

Results

announcement

19/01/2005 -new version
15/08/2005 -new help

Parameters choosen


R-value: 95

Minimal size of secondary structure: 8

Minimal size of protein unit: 16

Maximal size of protein unit: 0

Pruning tree ? No   CI cut-off:  0.2

Cut-off distance between atom: 8

Delta value in logistic function: 1.5



Hierarchical process of splitting



Tree
Contact Matrix



Visualisation of Protein units at all levels


Level 0
PU
Molecule needs Java 1.4 Structure


[1-39]:
1j24a_PU0_1-39
CI=2.93


[40-113]:
1j24a_PU0_40-113
CI=2.84


[114-133 ]:
1j24a_PU0_114-133
CI=0.00


Level 1
PU
Molecule needs Java 1.4 Structure


[1-39]:
1j24a_PU1_1-39
CI=2.93


[40-80]:
1j24a_PU1_40-80
CI=2.61


[81-113]:
1j24a_PU1_81-113
CI=0.68


[114-133 ]:
1j24a_PU1_114-133
CI=0.00


Level 2
PU
Molecule needs Java 1.4 Structure


[1-39]:
1j24a_PU2_1-39
CI=2.93


[40-80]:
1j24a_PU2_40-80
CI=2.61


[81-97]:
1j24a_PU2_81-97
CI=0.20


[98-113]:
1j24a_PU2_98-113
CI=0.46


[114-133 ]:
1j24a_PU2_114-133
CI=0.00


Level 3
PU
Molecule needs Java 1.4 Structure


[1-39]:
1j24a_PU3_1-39
CI=2.93


[40-61]:
1j24a_PU3_40-61
CI=0.42


[62-80]:
1j24a_PU3_62-80
CI=0.39


[81-97]:
1j24a_PU3_81-97
CI=0.20


[98-113]:
1j24a_PU3_98-113
CI=0.46


[114-133 ]:
1j24a_PU3_114-133
CI=0.00


Final level 4

PU
Molecule needs Java 1.4 Structure


[1-23]:
1j24a_PU_1-23
CI=0.32


[24-39]:
1j24a_PU_24-39
CI=0.00


[40-61]:
1j24a_PU_40-61
CI=0.42


[62-80]:
1j24a_PU_62-80
CI=0.39


[81-97]:
1j24a_PU_81-97
CI=0.20


[98-113]:
1j24a_PU_98-113
CI=0.46


[114-133 ]:
1j24a_PU_114-133
CI=0.00