Protein Peeling

Results

announcement

19/01/2005 -new version
15/08/2005 -new help

Parameters choosen


R-value: 95

Minimal size of secondary structure: 8

Minimal size of protein unit: 16

Maximal size of protein unit: 0

Pruning tree ? No   CI cut-off:  0.2

Cut-off distance between atom: 8

Delta value in logistic function: 1.5



Hierarchical process of splitting



Tree
Contact Matrix



Visualisation of Protein units at all levels


Level 0
PU
Molecule needs Java 1.4 Structure


[1-16]:
1j27a_PU0_1-16
CI=0.00


[17-57]:
1j27a_PU0_17-57
CI=1.87


[58-98 ]:
1j27a_PU0_58-98
CI=0.64


Level 1
PU
Molecule needs Java 1.4 Structure


[1-16]:
1j27a_PU1_1-16
CI=0.00


[17-57]:
1j27a_PU1_17-57
CI=1.87


[58-74]:
1j27a_PU1_58-74
CI=0.65


[75-98 ]:
1j27a_PU1_75-98
CI=0.46


Final level 2

PU
Molecule needs Java 1.4 Structure


[1-16]:
1j27a_PU_1-16
CI=0.00


[17-38]:
1j27a_PU_17-38
CI=0.00


[39-57]:
1j27a_PU_39-57
CI=2.57


[58-74]:
1j27a_PU_58-74
CI=0.65


[75-98 ]:
1j27a_PU_75-98
CI=0.46