Protein Peeling

Results

announcement

19/01/2005 -new version
15/08/2005 -new help

Parameters choosen


R-value: 95

Minimal size of secondary structure: 8

Minimal size of protein unit: 16

Maximal size of protein unit: 0

Pruning tree ? No   CI cut-off:  0.2

Cut-off distance between atom: 8

Delta value in logistic function: 1.5



Hierarchical process of splitting



Tree
Contact Matrix



Visualisation of Protein units at all levels


Level 0
PU
Molecule needs Java 1.4 Structure


[1-234]:
1j31a_PU0_1-234
CI=5.82


[235-255 ]:
1j31a_PU0_235-255
CI=0.53


Level 1
PU
Molecule needs Java 1.4 Structure


[1-127]:
1j31a_PU1_1-127
CI=4.40


[128-234]:
1j31a_PU1_128-234
CI=5.21


[235-255 ]:
1j31a_PU1_235-255
CI=0.53


Level 2
PU
Molecule needs Java 1.4 Structure


[1-127]:
1j31a_PU2_1-127
CI=4.40


[128-162]:
1j31a_PU2_128-162
CI=3.37


[163-234]:
1j31a_PU2_163-234
CI=4.75


[235-255 ]:
1j31a_PU2_235-255
CI=0.53


Level 3
PU
Molecule needs Java 1.4 Structure


[1-110]:
1j31a_PU3_1-110
CI=4.46


[111-127]:
1j31a_PU3_111-127
CI=0.86


[128-162]:
1j31a_PU3_128-162
CI=3.37


[163-234]:
1j31a_PU3_163-234
CI=4.75


[235-255 ]:
1j31a_PU3_235-255
CI=0.53


Level 4
PU
Molecule needs Java 1.4 Structure


[1-57]:
1j31a_PU4_1-57
CI=2.82


[58-110]:
1j31a_PU4_58-110
CI=3.68


[111-127]:
1j31a_PU4_111-127
CI=0.86


[128-162]:
1j31a_PU4_128-162
CI=3.37


[163-234]:
1j31a_PU4_163-234
CI=4.75


[235-255 ]:
1j31a_PU4_235-255
CI=0.53


Level 5
PU
Molecule needs Java 1.4 Structure


[1-39]:
1j31a_PU5_1-39
CI=2.28


[40-57]:
1j31a_PU5_40-57
CI=0.41


[58-110]:
1j31a_PU5_58-110
CI=3.68


[111-127]:
1j31a_PU5_111-127
CI=0.86


[128-162]:
1j31a_PU5_128-162
CI=3.37


[163-234]:
1j31a_PU5_163-234
CI=4.75


[235-255 ]:
1j31a_PU5_235-255
CI=0.53


Level 6
PU
Molecule needs Java 1.4 Structure


[1-39]:
1j31a_PU6_1-39
CI=2.28


[40-57]:
1j31a_PU6_40-57
CI=0.41


[58-78]:
1j31a_PU6_58-78
CI=0.62


[79-110]:
1j31a_PU6_79-110
CI=3.53


[111-127]:
1j31a_PU6_111-127
CI=0.86


[128-162]:
1j31a_PU6_128-162
CI=3.37


[163-234]:
1j31a_PU6_163-234
CI=4.75


[235-255 ]:
1j31a_PU6_235-255
CI=0.53


Level 7
PU
Molecule needs Java 1.4 Structure


[1-39]:
1j31a_PU7_1-39
CI=2.28


[40-57]:
1j31a_PU7_40-57
CI=0.41


[58-78]:
1j31a_PU7_58-78
CI=0.62


[79-110]:
1j31a_PU7_79-110
CI=3.53


[111-127]:
1j31a_PU7_111-127
CI=0.86


[128-162]:
1j31a_PU7_128-162
CI=3.37


[163-213]:
1j31a_PU7_163-213
CI=4.61


[214-234]:
1j31a_PU7_214-234
CI=0.70


[235-255 ]:
1j31a_PU7_235-255
CI=0.53


Level 8
PU
Molecule needs Java 1.4 Structure


[1-23]:
1j31a_PU8_1-23
CI=0.40


[24-39]:
1j31a_PU8_24-39
CI=0.56


[40-57]:
1j31a_PU8_40-57
CI=0.41


[58-78]:
1j31a_PU8_58-78
CI=0.62


[79-110]:
1j31a_PU8_79-110
CI=3.53


[111-127]:
1j31a_PU8_111-127
CI=0.86


[128-162]:
1j31a_PU8_128-162
CI=3.37


[163-213]:
1j31a_PU8_163-213
CI=4.61


[214-234]:
1j31a_PU8_214-234
CI=0.70


[235-255 ]:
1j31a_PU8_235-255
CI=0.53


Final level 9

PU
Molecule needs Java 1.4 Structure


[1-23]:
1j31a_PU_1-23
CI=0.40


[24-39]:
1j31a_PU_24-39
CI=0.56


[40-57]:
1j31a_PU_40-57
CI=0.41


[58-78]:
1j31a_PU_58-78
CI=0.62


[79-110]:
1j31a_PU_79-110
CI=3.53


[111-127]:
1j31a_PU_111-127
CI=0.86


[128-162]:
1j31a_PU_128-162
CI=3.37


[163-188]:
1j31a_PU_163-188
CI=1.24


[189-213]:
1j31a_PU_189-213
CI=1.81


[214-234]:
1j31a_PU_214-234
CI=0.70


[235-255 ]:
1j31a_PU_235-255
CI=0.53