Protein Peeling

Results

announcement

19/01/2005 -new version
15/08/2005 -new help

Parameters choosen


R-value: 95

Minimal size of secondary structure: 8

Minimal size of protein unit: 16

Maximal size of protein unit: 0

Pruning tree ? No   CI cut-off:  0.2

Cut-off distance between atom: 8

Delta value in logistic function: 1.5



Hierarchical process of splitting



Tree
Contact Matrix



Visualisation of Protein units at all levels


Level 0
PU
Molecule needs Java 1.4 Structure


[1-78]:
1j34c_PU0_1-78
CI=1.79


[79-94]:
1j34c_PU0_79-94
CI=0.69


[95-129 ]:
1j34c_PU0_95-129
CI=2.61


Level 1
PU
Molecule needs Java 1.4 Structure


[1-40]:
1j34c_PU1_1-40
CI=1.89


[41-78]:
1j34c_PU1_41-78
CI=0.50


[79-94]:
1j34c_PU1_79-94
CI=0.69


[95-129 ]:
1j34c_PU1_95-129
CI=2.61


Level 2
PU
Molecule needs Java 1.4 Structure


[1-17]:
1j34c_PU2_1-17
CI=1.95


[18-40]:
1j34c_PU2_18-40
CI=1.29


[41-78]:
1j34c_PU2_41-78
CI=0.50


[79-94]:
1j34c_PU2_79-94
CI=0.69


[95-129 ]:
1j34c_PU2_95-129
CI=2.61


Level 3
PU
Molecule needs Java 1.4 Structure


[1-17]:
1j34c_PU3_1-17
CI=1.95


[18-40]:
1j34c_PU3_18-40
CI=1.29


[41-58]:
1j34c_PU3_41-58
CI=0.20


[59-78]:
1j34c_PU3_59-78
CI=0.00


[79-94]:
1j34c_PU3_79-94
CI=0.69


[95-129 ]:
1j34c_PU3_95-129
CI=2.61


Final level 4

PU
Molecule needs Java 1.4 Structure


[1-17]:
1j34c_PU_1-17
CI=1.95


[18-40]:
1j34c_PU_18-40
CI=1.29


[41-58]:
1j34c_PU_41-58
CI=0.20


[59-78]:
1j34c_PU_59-78
CI=0.00


[79-94]:
1j34c_PU_79-94
CI=0.69


[95-113]:
1j34c_PU_95-113
CI=0.59


[114-129 ]:
1j34c_PU_114-129
CI=0.00