Protein Peeling

Results

announcement

19/01/2005 -new version
15/08/2005 -new help

Parameters choosen


R-value: 95

Minimal size of secondary structure: 8

Minimal size of protein unit: 16

Maximal size of protein unit: 0

Pruning tree ? No   CI cut-off:  0.2

Cut-off distance between atom: 8

Delta value in logistic function: 1.5



Hierarchical process of splitting



Tree
Contact Matrix



Visualisation of Protein units at all levels


Level 0
PU
Molecule needs Java 1.4 Structure


[1-39]:
1j3aa_PU0_1-39
CI=3.04


[40-55]:
1j3aa_PU0_40-55
CI=0.00


[56-129 ]:
1j3aa_PU0_56-129
CI=1.12


Level 1
PU
Molecule needs Java 1.4 Structure


[1-39]:
1j3aa_PU1_1-39
CI=3.04


[40-55]:
1j3aa_PU1_40-55
CI=0.00


[56-88]:
1j3aa_PU1_56-88
CI=1.10


[89-114]:
1j3aa_PU1_89-114
CI=0.07


[115-129 ]:
1j3aa_PU1_115-129
CI=0.62


Level 2
PU
Molecule needs Java 1.4 Structure


[1-39]:
1j3aa_PU2_1-39
CI=3.04


[40-55]:
1j3aa_PU2_40-55
CI=0.00


[56-72]:
1j3aa_PU2_56-72
CI=0.00


[73-88]:
1j3aa_PU2_73-88
CI=0.00


[89-114]:
1j3aa_PU2_89-114
CI=0.07


[115-129 ]:
1j3aa_PU2_115-129
CI=0.62


Final level 3

PU
Molecule needs Java 1.4 Structure


[1-17]:
1j3aa_PU_1-17
CI=0.11


[18-39]:
1j3aa_PU_18-39
CI=0.42


[40-55]:
1j3aa_PU_40-55
CI=0.00


[56-72]:
1j3aa_PU_56-72
CI=0.00


[73-88]:
1j3aa_PU_73-88
CI=0.00


[89-114]:
1j3aa_PU_89-114
CI=0.07


[115-129 ]:
1j3aa_PU_115-129
CI=0.62