Protein Peeling

Results

announcement

19/01/2005 -new version
15/08/2005 -new help

Parameters choosen


R-value: 95

Minimal size of secondary structure: 8

Minimal size of protein unit: 16

Maximal size of protein unit: 0

Pruning tree ? No   CI cut-off:  0.2

Cut-off distance between atom: 8

Delta value in logistic function: 1.5



Hierarchical process of splitting



Tree
Contact Matrix



Visualisation of Protein units at all levels


Level 0
PU
Molecule needs Java 1.4 Structure


[1-21]:
1j5ua_PU0_1-21
CI=0.00


[22-99]:
1j5ua_PU0_22-99
CI=3.15


[100-125 ]:
1j5ua_PU0_100-125
CI=3.06


Level 1
PU
Molecule needs Java 1.4 Structure


[1-21]:
1j5ua_PU1_1-21
CI=0.00


[22-48]:
1j5ua_PU1_22-48
CI=0.06


[49-64]:
1j5ua_PU1_49-64
CI=0.46


[65-99]:
1j5ua_PU1_65-99
CI=1.97


[100-125 ]:
1j5ua_PU1_100-125
CI=3.06


Final level 2

PU
Molecule needs Java 1.4 Structure


[1-21]:
1j5ua_PU_1-21
CI=0.00


[22-48]:
1j5ua_PU_22-48
CI=0.06


[49-64]:
1j5ua_PU_49-64
CI=0.46


[65-83]:
1j5ua_PU_65-83
CI=0.29


[84-99]:
1j5ua_PU_84-99
CI=0.00


[100-125 ]:
1j5ua_PU_100-125
CI=3.06