Protein Peeling

Results

announcement

19/01/2005 -new version
15/08/2005 -new help

Parameters choosen


R-value: 95

Minimal size of secondary structure: 8

Minimal size of protein unit: 16

Maximal size of protein unit: 0

Pruning tree ? No   CI cut-off:  0.2

Cut-off distance between atom: 8

Delta value in logistic function: 1.5



Hierarchical process of splitting



Tree
Contact Matrix



Visualisation of Protein units at all levels


Level 0
PU
Molecule needs Java 1.4 Structure


[1-187]:
1j5wa_PU0_1-187
CI=4.22


[188-270 ]:
1j5wa_PU0_188-270
CI=1.47


Level 1
PU
Molecule needs Java 1.4 Structure


[1-158]:
1j5wa_PU1_1-158
CI=4.35


[159-187]:
1j5wa_PU1_159-187
CI=1.43


[188-270 ]:
1j5wa_PU1_188-270
CI=1.47


Level 2
PU
Molecule needs Java 1.4 Structure


[1-72]:
1j5wa_PU2_1-72
CI=3.40


[73-148]:
1j5wa_PU2_73-148
CI=3.52


[149-158]:
1j5wa_PU2_149-158
CI=0.00


[159-187]:
1j5wa_PU2_159-187
CI=1.43


[188-270 ]:
1j5wa_PU2_188-270
CI=1.47


Level 3
PU
Molecule needs Java 1.4 Structure


[1-17]:
1j5wa_PU3_1-17
CI=0.10


[18-72]:
1j5wa_PU3_18-72
CI=3.85


[73-148]:
1j5wa_PU3_73-148
CI=3.52


[149-158]:
1j5wa_PU3_149-158
CI=0.00


[159-187]:
1j5wa_PU3_159-187
CI=1.43


[188-270 ]:
1j5wa_PU3_188-270
CI=1.47


Level 4
PU
Molecule needs Java 1.4 Structure


[1-17]:
1j5wa_PU4_1-17
CI=0.10


[18-72]:
1j5wa_PU4_18-72
CI=3.85


[73-148]:
1j5wa_PU4_73-148
CI=3.52


[149-158]:
1j5wa_PU4_149-158
CI=0.00


[159-187]:
1j5wa_PU4_159-187
CI=1.43


[188-242]:
1j5wa_PU4_188-242
CI=1.63


[243-270 ]:
1j5wa_PU4_243-270
CI=0.00


Level 5
PU
Molecule needs Java 1.4 Structure


[1-17]:
1j5wa_PU5_1-17
CI=0.10


[18-72]:
1j5wa_PU5_18-72
CI=3.85


[73-98]:
1j5wa_PU5_73-98
CI=0.21


[99-148]:
1j5wa_PU5_99-148
CI=4.36


[149-158]:
1j5wa_PU5_149-158
CI=0.00


[159-187]:
1j5wa_PU5_159-187
CI=1.43


[188-242]:
1j5wa_PU5_188-242
CI=1.63


[243-270 ]:
1j5wa_PU5_243-270
CI=0.00


Level 6
PU
Molecule needs Java 1.4 Structure


[1-17]:
1j5wa_PU6_1-17
CI=0.10


[18-72]:
1j5wa_PU6_18-72
CI=3.85


[73-98]:
1j5wa_PU6_73-98
CI=0.21


[99-148]:
1j5wa_PU6_99-148
CI=4.36


[149-158]:
1j5wa_PU6_149-158
CI=0.00


[159-187]:
1j5wa_PU6_159-187
CI=1.43


[188-205]:
1j5wa_PU6_188-205
CI=0.00


[206-242]:
1j5wa_PU6_206-242
CI=1.12


[243-270 ]:
1j5wa_PU6_243-270
CI=0.00


Level 7
PU
Molecule needs Java 1.4 Structure


[1-17]:
1j5wa_PU7_1-17
CI=0.10


[18-72]:
1j5wa_PU7_18-72
CI=3.85


[73-98]:
1j5wa_PU7_73-98
CI=0.21


[99-148]:
1j5wa_PU7_99-148
CI=4.36


[149-158]:
1j5wa_PU7_149-158
CI=0.00


[159-187]:
1j5wa_PU7_159-187
CI=1.43


[188-205]:
1j5wa_PU7_188-205
CI=0.00


[206-226]:
1j5wa_PU7_206-226
CI=1.57


[227-242]:
1j5wa_PU7_227-242
CI=0.11


[243-270 ]:
1j5wa_PU7_243-270
CI=0.00


Level 8
PU
Molecule needs Java 1.4 Structure


[1-17]:
1j5wa_PU8_1-17
CI=0.10


[18-72]:
1j5wa_PU8_18-72
CI=3.85


[73-98]:
1j5wa_PU8_73-98
CI=0.21


[99-130]:
1j5wa_PU8_99-130
CI=3.46


[131-148]:
1j5wa_PU8_131-148
CI=1.65


[149-158]:
1j5wa_PU8_149-158
CI=0.00


[159-187]:
1j5wa_PU8_159-187
CI=1.43


[188-205]:
1j5wa_PU8_188-205
CI=0.00


[206-226]:
1j5wa_PU8_206-226
CI=1.57


[227-242]:
1j5wa_PU8_227-242
CI=0.11


[243-270 ]:
1j5wa_PU8_243-270
CI=0.00


Final level 9

PU
Molecule needs Java 1.4 Structure


[1-17]:
1j5wa_PU_1-17
CI=0.10


[18-51]:
1j5wa_PU_18-51
CI=2.17


[52-72]:
1j5wa_PU_52-72
CI=1.69


[73-98]:
1j5wa_PU_73-98
CI=0.21


[99-130]:
1j5wa_PU_99-130
CI=3.46


[131-148]:
1j5wa_PU_131-148
CI=1.65


[149-158]:
1j5wa_PU_149-158
CI=0.00


[159-187]:
1j5wa_PU_159-187
CI=1.43


[188-205]:
1j5wa_PU_188-205
CI=0.00


[206-226]:
1j5wa_PU_206-226
CI=1.57


[227-242]:
1j5wa_PU_227-242
CI=0.11


[243-270 ]:
1j5wa_PU_243-270
CI=0.00