Protein Peeling

Results

announcement

19/01/2005 -new version
15/08/2005 -new help

Parameters choosen


R-value: 95

Minimal size of secondary structure: 8

Minimal size of protein unit: 16

Maximal size of protein unit: 0

Pruning tree ? No   CI cut-off:  0.2

Cut-off distance between atom: 8

Delta value in logistic function: 1.5



Hierarchical process of splitting



Tree
Contact Matrix



Visualisation of Protein units at all levels


Level 0
PU
Molecule needs Java 1.4 Structure


[1-34]:
1j6oa_PU0_1-34
CI=0.83


[35-151]:
1j6oa_PU0_35-151
CI=4.38


[152-259 ]:
1j6oa_PU0_152-259
CI=3.22


Level 1
PU
Molecule needs Java 1.4 Structure


[1-34]:
1j6oa_PU1_1-34
CI=0.83


[35-151]:
1j6oa_PU1_35-151
CI=4.38


[152-203]:
1j6oa_PU1_152-203
CI=2.47


[204-226]:
1j6oa_PU1_204-226
CI=2.44


[227-259 ]:
1j6oa_PU1_227-259
CI=0.63


Level 2
PU
Molecule needs Java 1.4 Structure


[1-34]:
1j6oa_PU2_1-34
CI=0.83


[35-151]:
1j6oa_PU2_35-151
CI=4.38


[152-203]:
1j6oa_PU2_152-203
CI=2.47


[204-226]:
1j6oa_PU2_204-226
CI=2.44


[227-243]:
1j6oa_PU2_227-243
CI=1.20


[244-259 ]:
1j6oa_PU2_244-259
CI=0.00


Level 3
PU
Molecule needs Java 1.4 Structure


[1-34]:
1j6oa_PU3_1-34
CI=0.83


[35-94]:
1j6oa_PU3_35-94
CI=3.85


[95-151]:
1j6oa_PU3_95-151
CI=2.59


[152-203]:
1j6oa_PU3_152-203
CI=2.47


[204-226]:
1j6oa_PU3_204-226
CI=2.44


[227-243]:
1j6oa_PU3_227-243
CI=1.20


[244-259 ]:
1j6oa_PU3_244-259
CI=0.00


Level 4
PU
Molecule needs Java 1.4 Structure


[1-18]:
1j6oa_PU4_1-18
CI=0.00


[19-34]:
1j6oa_PU4_19-34
CI=0.34


[35-94]:
1j6oa_PU4_35-94
CI=3.85


[95-151]:
1j6oa_PU4_95-151
CI=2.59


[152-203]:
1j6oa_PU4_152-203
CI=2.47


[204-226]:
1j6oa_PU4_204-226
CI=2.44


[227-243]:
1j6oa_PU4_227-243
CI=1.20


[244-259 ]:
1j6oa_PU4_244-259
CI=0.00


Level 5
PU
Molecule needs Java 1.4 Structure


[1-18]:
1j6oa_PU5_1-18
CI=0.00


[19-34]:
1j6oa_PU5_19-34
CI=0.34


[35-94]:
1j6oa_PU5_35-94
CI=3.85


[95-151]:
1j6oa_PU5_95-151
CI=2.59


[152-176]:
1j6oa_PU5_152-176
CI=1.67


[177-203]:
1j6oa_PU5_177-203
CI=0.62


[204-226]:
1j6oa_PU5_204-226
CI=2.44


[227-243]:
1j6oa_PU5_227-243
CI=1.20


[244-259 ]:
1j6oa_PU5_244-259
CI=0.00


Level 6
PU
Molecule needs Java 1.4 Structure


[1-18]:
1j6oa_PU6_1-18
CI=0.00


[19-34]:
1j6oa_PU6_19-34
CI=0.34


[35-94]:
1j6oa_PU6_35-94
CI=3.85


[95-115]:
1j6oa_PU6_95-115
CI=0.95


[116-151]:
1j6oa_PU6_116-151
CI=1.52


[152-176]:
1j6oa_PU6_152-176
CI=1.67


[177-203]:
1j6oa_PU6_177-203
CI=0.62


[204-226]:
1j6oa_PU6_204-226
CI=2.44


[227-243]:
1j6oa_PU6_227-243
CI=1.20


[244-259 ]:
1j6oa_PU6_244-259
CI=0.00


Level 7
PU
Molecule needs Java 1.4 Structure


[1-18]:
1j6oa_PU7_1-18
CI=0.00


[19-34]:
1j6oa_PU7_19-34
CI=0.34


[35-62]:
1j6oa_PU7_35-62
CI=3.30


[63-94]:
1j6oa_PU7_63-94
CI=0.66


[95-115]:
1j6oa_PU7_95-115
CI=0.95


[116-151]:
1j6oa_PU7_116-151
CI=1.52


[152-176]:
1j6oa_PU7_152-176
CI=1.67


[177-203]:
1j6oa_PU7_177-203
CI=0.62


[204-226]:
1j6oa_PU7_204-226
CI=2.44


[227-243]:
1j6oa_PU7_227-243
CI=1.20


[244-259 ]:
1j6oa_PU7_244-259
CI=0.00


Final level 8

PU
Molecule needs Java 1.4 Structure


[1-18]:
1j6oa_PU_1-18
CI=0.00


[19-34]:
1j6oa_PU_19-34
CI=0.34


[35-62]:
1j6oa_PU_35-62
CI=3.30


[63-94]:
1j6oa_PU_63-94
CI=0.66


[95-115]:
1j6oa_PU_95-115
CI=0.95


[116-132]:
1j6oa_PU_116-132
CI=0.32


[133-151]:
1j6oa_PU_133-151
CI=0.00


[152-176]:
1j6oa_PU_152-176
CI=1.67


[177-203]:
1j6oa_PU_177-203
CI=0.62


[204-226]:
1j6oa_PU_204-226
CI=2.44


[227-243]:
1j6oa_PU_227-243
CI=1.20


[244-259 ]:
1j6oa_PU_244-259
CI=0.00