Protein Peeling

Results

announcement

19/01/2005 -new version
15/08/2005 -new help

Parameters choosen


R-value: 95

Minimal size of secondary structure: 8

Minimal size of protein unit: 16

Maximal size of protein unit: 0

Pruning tree ? No   CI cut-off:  0.2

Cut-off distance between atom: 8

Delta value in logistic function: 1.5



Hierarchical process of splitting



Tree
Contact Matrix



Visualisation of Protein units at all levels


Level 0
PU
Molecule needs Java 1.4 Structure


[1-194]:
1j71a_PU0_1-194
CI=4.91


[195-304]:
1j71a_PU0_195-304
CI=4.65


[305-334 ]:
1j71a_PU0_305-334
CI=1.70


Level 1
PU
Molecule needs Java 1.4 Structure


[1-175]:
1j71a_PU1_1-175
CI=5.31


[176-194]:
1j71a_PU1_176-194
CI=0.00


[195-304]:
1j71a_PU1_195-304
CI=4.65


[305-334 ]:
1j71a_PU1_305-334
CI=1.70


Level 2
PU
Molecule needs Java 1.4 Structure


[1-20]:
1j71a_PU2_1-20
CI=1.12


[21-139]:
1j71a_PU2_21-139
CI=4.71


[140-175]:
1j71a_PU2_140-175
CI=2.79


[176-194]:
1j71a_PU2_176-194
CI=0.00


[195-304]:
1j71a_PU2_195-304
CI=4.65


[305-334 ]:
1j71a_PU2_305-334
CI=1.70


Level 3
PU
Molecule needs Java 1.4 Structure


[1-20]:
1j71a_PU3_1-20
CI=1.12


[21-139]:
1j71a_PU3_21-139
CI=4.71


[140-175]:
1j71a_PU3_140-175
CI=2.79


[176-194]:
1j71a_PU3_176-194
CI=0.00


[195-234]:
1j71a_PU3_195-234
CI=2.05


[235-289]:
1j71a_PU3_235-289
CI=2.81


[290-304]:
1j71a_PU3_290-304
CI=0.23


[305-334 ]:
1j71a_PU3_305-334
CI=1.70


Level 4
PU
Molecule needs Java 1.4 Structure


[1-20]:
1j71a_PU4_1-20
CI=1.12


[21-139]:
1j71a_PU4_21-139
CI=4.71


[140-175]:
1j71a_PU4_140-175
CI=2.79


[176-194]:
1j71a_PU4_176-194
CI=0.00


[195-234]:
1j71a_PU4_195-234
CI=2.05


[235-252]:
1j71a_PU4_235-252
CI=1.77


[253-289]:
1j71a_PU4_253-289
CI=2.44


[290-304]:
1j71a_PU4_290-304
CI=0.23


[305-334 ]:
1j71a_PU4_305-334
CI=1.70


Level 5
PU
Molecule needs Java 1.4 Structure


[1-20]:
1j71a_PU5_1-20
CI=1.12


[21-139]:
1j71a_PU5_21-139
CI=4.71


[140-175]:
1j71a_PU5_140-175
CI=2.79


[176-194]:
1j71a_PU5_176-194
CI=0.00


[195-216]:
1j71a_PU5_195-216
CI=2.67


[217-234]:
1j71a_PU5_217-234
CI=0.10


[235-252]:
1j71a_PU5_235-252
CI=1.77


[253-289]:
1j71a_PU5_253-289
CI=2.44


[290-304]:
1j71a_PU5_290-304
CI=0.23


[305-334 ]:
1j71a_PU5_305-334
CI=1.70


Level 6
PU
Molecule needs Java 1.4 Structure


[1-20]:
1j71a_PU6_1-20
CI=1.12


[21-95]:
1j71a_PU6_21-95
CI=2.26


[96-111]:
1j71a_PU6_96-111
CI=2.31


[112-139]:
1j71a_PU6_112-139
CI=0.34


[140-175]:
1j71a_PU6_140-175
CI=2.79


[176-194]:
1j71a_PU6_176-194
CI=0.00


[195-216]:
1j71a_PU6_195-216
CI=2.67


[217-234]:
1j71a_PU6_217-234
CI=0.10


[235-252]:
1j71a_PU6_235-252
CI=1.77


[253-289]:
1j71a_PU6_253-289
CI=2.44


[290-304]:
1j71a_PU6_290-304
CI=0.23


[305-334 ]:
1j71a_PU6_305-334
CI=1.70


Level 7
PU
Molecule needs Java 1.4 Structure


[1-20]:
1j71a_PU7_1-20
CI=1.12


[21-73]:
1j71a_PU7_21-73
CI=1.88


[74-95]:
1j71a_PU7_74-95
CI=2.73


[96-111]:
1j71a_PU7_96-111
CI=2.31


[112-139]:
1j71a_PU7_112-139
CI=0.34


[140-175]:
1j71a_PU7_140-175
CI=2.79


[176-194]:
1j71a_PU7_176-194
CI=0.00


[195-216]:
1j71a_PU7_195-216
CI=2.67


[217-234]:
1j71a_PU7_217-234
CI=0.10


[235-252]:
1j71a_PU7_235-252
CI=1.77


[253-289]:
1j71a_PU7_253-289
CI=2.44


[290-304]:
1j71a_PU7_290-304
CI=0.23


[305-334 ]:
1j71a_PU7_305-334
CI=1.70


Level 8
PU
Molecule needs Java 1.4 Structure


[1-20]:
1j71a_PU8_1-20
CI=1.12


[21-39]:
1j71a_PU8_21-39
CI=0.00


[40-73]:
1j71a_PU8_40-73
CI=1.40


[74-95]:
1j71a_PU8_74-95
CI=2.73


[96-111]:
1j71a_PU8_96-111
CI=2.31


[112-139]:
1j71a_PU8_112-139
CI=0.34


[140-175]:
1j71a_PU8_140-175
CI=2.79


[176-194]:
1j71a_PU8_176-194
CI=0.00


[195-216]:
1j71a_PU8_195-216
CI=2.67


[217-234]:
1j71a_PU8_217-234
CI=0.10


[235-252]:
1j71a_PU8_235-252
CI=1.77


[253-289]:
1j71a_PU8_253-289
CI=2.44


[290-304]:
1j71a_PU8_290-304
CI=0.23


[305-334 ]:
1j71a_PU8_305-334
CI=1.70


Level 9
PU
Molecule needs Java 1.4 Structure


[1-20]:
1j71a_PU9_1-20
CI=1.12


[21-39]:
1j71a_PU9_21-39
CI=0.00


[40-73]:
1j71a_PU9_40-73
CI=1.40


[74-95]:
1j71a_PU9_74-95
CI=2.73


[96-111]:
1j71a_PU9_96-111
CI=2.31


[112-139]:
1j71a_PU9_112-139
CI=0.34


[140-158]:
1j71a_PU9_140-158
CI=1.53


[159-175]:
1j71a_PU9_159-175
CI=0.98


[176-194]:
1j71a_PU9_176-194
CI=0.00


[195-216]:
1j71a_PU9_195-216
CI=2.67


[217-234]:
1j71a_PU9_217-234
CI=0.10


[235-252]:
1j71a_PU9_235-252
CI=1.77


[253-289]:
1j71a_PU9_253-289
CI=2.44


[290-304]:
1j71a_PU9_290-304
CI=0.23


[305-334 ]:
1j71a_PU9_305-334
CI=1.70


Final level 10

PU
Molecule needs Java 1.4 Structure


[1-20]:
1j71a_PU_1-20
CI=1.12


[21-39]:
1j71a_PU_21-39
CI=0.00


[40-56]:
1j71a_PU_40-56
CI=0.31


[57-73]:
1j71a_PU_57-73
CI=0.11


[74-95]:
1j71a_PU_74-95
CI=2.73


[96-111]:
1j71a_PU_96-111
CI=2.31


[112-139]:
1j71a_PU_112-139
CI=0.34


[140-158]:
1j71a_PU_140-158
CI=1.53


[159-175]:
1j71a_PU_159-175
CI=0.98


[176-194]:
1j71a_PU_176-194
CI=0.00


[195-216]:
1j71a_PU_195-216
CI=2.67


[217-234]:
1j71a_PU_217-234
CI=0.10


[235-252]:
1j71a_PU_235-252
CI=1.77


[253-289]:
1j71a_PU_253-289
CI=2.44


[290-304]:
1j71a_PU_290-304
CI=0.23


[305-334 ]:
1j71a_PU_305-334
CI=1.70