Protein Peeling

Results

announcement

19/01/2005 -new version
15/08/2005 -new help

Parameters choosen


R-value: 95

Minimal size of secondary structure: 8

Minimal size of protein unit: 16

Maximal size of protein unit: 0

Pruning tree ? No   CI cut-off:  0.2

Cut-off distance between atom: 8

Delta value in logistic function: 1.5



Hierarchical process of splitting



Tree
Contact Matrix



Visualisation of Protein units at all levels


Level 0
PU
Molecule needs Java 1.4 Structure


[1-38]:
1j79a_PU0_1-38
CI=1.76


[39-168]:
1j79a_PU0_39-168
CI=2.96


[169-342 ]:
1j79a_PU0_169-342
CI=3.96


Level 1
PU
Molecule needs Java 1.4 Structure


[1-38]:
1j79a_PU1_1-38
CI=1.76


[39-135]:
1j79a_PU1_39-135
CI=2.94


[136-168]:
1j79a_PU1_136-168
CI=1.14


[169-342 ]:
1j79a_PU1_169-342
CI=3.96


Level 2
PU
Molecule needs Java 1.4 Structure


[1-38]:
1j79a_PU2_1-38
CI=1.76


[39-135]:
1j79a_PU2_39-135
CI=2.94


[136-168]:
1j79a_PU2_136-168
CI=1.14


[169-304]:
1j79a_PU2_169-304
CI=3.60


[305-342 ]:
1j79a_PU2_305-342
CI=3.09


Level 3
PU
Molecule needs Java 1.4 Structure


[1-38]:
1j79a_PU3_1-38
CI=1.76


[39-135]:
1j79a_PU3_39-135
CI=2.94


[136-152]:
1j79a_PU3_136-152
CI=1.63


[153-168]:
1j79a_PU3_153-168
CI=0.12


[169-304]:
1j79a_PU3_169-304
CI=3.60


[305-342 ]:
1j79a_PU3_305-342
CI=3.09


Level 4
PU
Molecule needs Java 1.4 Structure


[1-38]:
1j79a_PU4_1-38
CI=1.76


[39-54]:
1j79a_PU4_39-54
CI=0.34


[55-73]:
1j79a_PU4_55-73
CI=0.86


[74-135]:
1j79a_PU4_74-135
CI=2.82


[136-152]:
1j79a_PU4_136-152
CI=1.63


[153-168]:
1j79a_PU4_153-168
CI=0.12


[169-304]:
1j79a_PU4_169-304
CI=3.60


[305-342 ]:
1j79a_PU4_305-342
CI=3.09


Level 5
PU
Molecule needs Java 1.4 Structure


[1-38]:
1j79a_PU5_1-38
CI=1.76


[39-54]:
1j79a_PU5_39-54
CI=0.34


[55-73]:
1j79a_PU5_55-73
CI=0.86


[74-135]:
1j79a_PU5_74-135
CI=2.82


[136-152]:
1j79a_PU5_136-152
CI=1.63


[153-168]:
1j79a_PU5_153-168
CI=0.12


[169-246]:
1j79a_PU5_169-246
CI=3.19


[247-269]:
1j79a_PU5_247-269
CI=1.96


[270-304]:
1j79a_PU5_270-304
CI=1.02


[305-342 ]:
1j79a_PU5_305-342
CI=3.09


Level 6
PU
Molecule needs Java 1.4 Structure


[1-38]:
1j79a_PU6_1-38
CI=1.76


[39-54]:
1j79a_PU6_39-54
CI=0.34


[55-73]:
1j79a_PU6_55-73
CI=0.86


[74-135]:
1j79a_PU6_74-135
CI=2.82


[136-152]:
1j79a_PU6_136-152
CI=1.63


[153-168]:
1j79a_PU6_153-168
CI=0.12


[169-202]:
1j79a_PU6_169-202
CI=2.02


[203-218]:
1j79a_PU6_203-218
CI=0.45


[219-246]:
1j79a_PU6_219-246
CI=0.13


[247-269]:
1j79a_PU6_247-269
CI=1.96


[270-304]:
1j79a_PU6_270-304
CI=1.02


[305-342 ]:
1j79a_PU6_305-342
CI=3.09


Level 7
PU
Molecule needs Java 1.4 Structure


[1-38]:
1j79a_PU7_1-38
CI=1.76


[39-54]:
1j79a_PU7_39-54
CI=0.34


[55-73]:
1j79a_PU7_55-73
CI=0.86


[74-118]:
1j79a_PU7_74-118
CI=2.59


[119-135]:
1j79a_PU7_119-135
CI=0.21


[136-152]:
1j79a_PU7_136-152
CI=1.63


[153-168]:
1j79a_PU7_153-168
CI=0.12


[169-202]:
1j79a_PU7_169-202
CI=2.02


[203-218]:
1j79a_PU7_203-218
CI=0.45


[219-246]:
1j79a_PU7_219-246
CI=0.13


[247-269]:
1j79a_PU7_247-269
CI=1.96


[270-304]:
1j79a_PU7_270-304
CI=1.02


[305-342 ]:
1j79a_PU7_305-342
CI=3.09


Final level 8

PU
Molecule needs Java 1.4 Structure


[1-38]:
1j79a_PU_1-38
CI=1.76


[39-54]:
1j79a_PU_39-54
CI=0.34


[55-73]:
1j79a_PU_55-73
CI=0.86


[74-98]:
1j79a_PU_74-98
CI=1.35


[99-118]:
1j79a_PU_99-118
CI=1.86


[119-135]:
1j79a_PU_119-135
CI=0.21


[136-152]:
1j79a_PU_136-152
CI=1.63


[153-168]:
1j79a_PU_153-168
CI=0.12


[169-202]:
1j79a_PU_169-202
CI=2.02


[203-218]:
1j79a_PU_203-218
CI=0.45


[219-246]:
1j79a_PU_219-246
CI=0.13


[247-269]:
1j79a_PU_247-269
CI=1.96


[270-304]:
1j79a_PU_270-304
CI=1.02


[305-342 ]:
1j79a_PU_305-342
CI=3.09