Protein Peeling

Results

announcement

19/01/2005 -new version
15/08/2005 -new help

Parameters choosen


R-value: 95

Minimal size of secondary structure: 8

Minimal size of protein unit: 16

Maximal size of protein unit: 0

Pruning tree ? No   CI cut-off:  0.2

Cut-off distance between atom: 8

Delta value in logistic function: 1.5



Hierarchical process of splitting



Tree
Contact Matrix



Visualisation of Protein units at all levels


Level 0
PU
Molecule needs Java 1.4 Structure


[1-59]:
1j7xa_PU0_1-59
CI=0.53


[60-298 ]:
1j7xa_PU0_60-298
CI=4.64


Level 1
PU
Molecule needs Java 1.4 Structure


[1-34]:
1j7xa_PU1_1-34
CI=0.38


[35-59]:
1j7xa_PU1_35-59
CI=0.22


[60-298 ]:
1j7xa_PU1_60-298
CI=4.64


Level 2
PU
Molecule needs Java 1.4 Structure


[1-34]:
1j7xa_PU2_1-34
CI=0.38


[35-59]:
1j7xa_PU2_35-59
CI=0.22


[60-75]:
1j7xa_PU2_60-75
CI=0.00


[76-140]:
1j7xa_PU2_76-140
CI=2.01


[141-298 ]:
1j7xa_PU2_141-298
CI=4.50


Level 3
PU
Molecule needs Java 1.4 Structure


[1-34]:
1j7xa_PU3_1-34
CI=0.38


[35-59]:
1j7xa_PU3_35-59
CI=0.22


[60-75]:
1j7xa_PU3_60-75
CI=0.00


[76-140]:
1j7xa_PU3_76-140
CI=2.01


[141-238]:
1j7xa_PU3_141-238
CI=4.03


[239-258]:
1j7xa_PU3_239-258
CI=2.55


[259-298 ]:
1j7xa_PU3_259-298
CI=0.56


Level 4
PU
Molecule needs Java 1.4 Structure


[1-34]:
1j7xa_PU4_1-34
CI=0.38


[35-59]:
1j7xa_PU4_35-59
CI=0.22


[60-75]:
1j7xa_PU4_60-75
CI=0.00


[76-140]:
1j7xa_PU4_76-140
CI=2.01


[141-238]:
1j7xa_PU4_141-238
CI=4.03


[239-258]:
1j7xa_PU4_239-258
CI=2.55


[259-275]:
1j7xa_PU4_259-275
CI=0.87


[276-298 ]:
1j7xa_PU4_276-298
CI=0.31


Level 5
PU
Molecule needs Java 1.4 Structure


[1-34]:
1j7xa_PU5_1-34
CI=0.38


[35-59]:
1j7xa_PU5_35-59
CI=0.22


[60-75]:
1j7xa_PU5_60-75
CI=0.00


[76-140]:
1j7xa_PU5_76-140
CI=2.01


[141-156]:
1j7xa_PU5_141-156
CI=0.00


[157-201]:
1j7xa_PU5_157-201
CI=3.22


[202-238]:
1j7xa_PU5_202-238
CI=2.94


[239-258]:
1j7xa_PU5_239-258
CI=2.55


[259-275]:
1j7xa_PU5_259-275
CI=0.87


[276-298 ]:
1j7xa_PU5_276-298
CI=0.31


Level 6
PU
Molecule needs Java 1.4 Structure


[1-18]:
1j7xa_PU6_1-18
CI=0.00


[19-34]:
1j7xa_PU6_19-34
CI=0.11


[35-59]:
1j7xa_PU6_35-59
CI=0.22


[60-75]:
1j7xa_PU6_60-75
CI=0.00


[76-140]:
1j7xa_PU6_76-140
CI=2.01


[141-156]:
1j7xa_PU6_141-156
CI=0.00


[157-201]:
1j7xa_PU6_157-201
CI=3.22


[202-238]:
1j7xa_PU6_202-238
CI=2.94


[239-258]:
1j7xa_PU6_239-258
CI=2.55


[259-275]:
1j7xa_PU6_259-275
CI=0.87


[276-298 ]:
1j7xa_PU6_276-298
CI=0.31


Level 7
PU
Molecule needs Java 1.4 Structure


[1-18]:
1j7xa_PU7_1-18
CI=0.00


[19-34]:
1j7xa_PU7_19-34
CI=0.11


[35-59]:
1j7xa_PU7_35-59
CI=0.22


[60-75]:
1j7xa_PU7_60-75
CI=0.00


[76-97]:
1j7xa_PU7_76-97
CI=0.08


[98-140]:
1j7xa_PU7_98-140
CI=1.59


[141-156]:
1j7xa_PU7_141-156
CI=0.00


[157-201]:
1j7xa_PU7_157-201
CI=3.22


[202-238]:
1j7xa_PU7_202-238
CI=2.94


[239-258]:
1j7xa_PU7_239-258
CI=2.55


[259-275]:
1j7xa_PU7_259-275
CI=0.87


[276-298 ]:
1j7xa_PU7_276-298
CI=0.31


Level 8
PU
Molecule needs Java 1.4 Structure


[1-18]:
1j7xa_PU8_1-18
CI=0.00


[19-34]:
1j7xa_PU8_19-34
CI=0.11


[35-59]:
1j7xa_PU8_35-59
CI=0.22


[60-75]:
1j7xa_PU8_60-75
CI=0.00


[76-97]:
1j7xa_PU8_76-97
CI=0.08


[98-114]:
1j7xa_PU8_98-114
CI=1.43


[115-140]:
1j7xa_PU8_115-140
CI=0.07


[141-156]:
1j7xa_PU8_141-156
CI=0.00


[157-201]:
1j7xa_PU8_157-201
CI=3.22


[202-238]:
1j7xa_PU8_202-238
CI=2.94


[239-258]:
1j7xa_PU8_239-258
CI=2.55


[259-275]:
1j7xa_PU8_259-275
CI=0.87


[276-298 ]:
1j7xa_PU8_276-298
CI=0.31


Final level 9

PU
Molecule needs Java 1.4 Structure


[1-18]:
1j7xa_PU_1-18
CI=0.00


[19-34]:
1j7xa_PU_19-34
CI=0.11


[35-59]:
1j7xa_PU_35-59
CI=0.22


[60-75]:
1j7xa_PU_60-75
CI=0.00


[76-97]:
1j7xa_PU_76-97
CI=0.08


[98-114]:
1j7xa_PU_98-114
CI=1.43


[115-140]:
1j7xa_PU_115-140
CI=0.07


[141-156]:
1j7xa_PU_141-156
CI=0.00


[157-184]:
1j7xa_PU_157-184
CI=0.87


[185-201]:
1j7xa_PU_185-201
CI=0.00


[202-238]:
1j7xa_PU_202-238
CI=2.94


[239-258]:
1j7xa_PU_239-258
CI=2.55


[259-275]:
1j7xa_PU_259-275
CI=0.87


[276-298 ]:
1j7xa_PU_276-298
CI=0.31