Protein Peeling

Results

announcement

19/01/2005 -new version
15/08/2005 -new help

Parameters choosen


R-value: 95

Minimal size of secondary structure: 8

Minimal size of protein unit: 16

Maximal size of protein unit: 0

Pruning tree ? No   CI cut-off:  0.2

Cut-off distance between atom: 8

Delta value in logistic function: 1.5



Hierarchical process of splitting



Tree
Contact Matrix



Visualisation of Protein units at all levels


Level 0
PU
Molecule needs Java 1.4 Structure


[1-74]:
1j83a_PU0_1-74
CI=4.56


[75-158]:
1j83a_PU0_75-158
CI=4.55


[159-178 ]:
1j83a_PU0_159-178
CI=0.00


Level 1
PU
Molecule needs Java 1.4 Structure


[1-32]:
1j83a_PU1_1-32
CI=2.07


[33-63]:
1j83a_PU1_33-63
CI=1.72


[64-74]:
1j83a_PU1_64-74
CI=0.00


[75-158]:
1j83a_PU1_75-158
CI=4.55


[159-178 ]:
1j83a_PU1_159-178
CI=0.00


Level 2
PU
Molecule needs Java 1.4 Structure


[1-32]:
1j83a_PU2_1-32
CI=2.07


[33-63]:
1j83a_PU2_33-63
CI=1.72


[64-74]:
1j83a_PU2_64-74
CI=0.00


[75-114]:
1j83a_PU2_75-114
CI=0.76


[115-134]:
1j83a_PU2_115-134
CI=1.41


[135-158]:
1j83a_PU2_135-158
CI=0.78


[159-178 ]:
1j83a_PU2_159-178
CI=0.00


Final level 3

PU
Molecule needs Java 1.4 Structure


[1-32]:
1j83a_PU_1-32
CI=2.07


[33-63]:
1j83a_PU_33-63
CI=1.72


[64-74]:
1j83a_PU_64-74
CI=0.00


[75-94]:
1j83a_PU_75-94
CI=0.00


[95-114]:
1j83a_PU_95-114
CI=1.40


[115-134]:
1j83a_PU_115-134
CI=1.41


[135-158]:
1j83a_PU_135-158
CI=0.78


[159-178 ]:
1j83a_PU_159-178
CI=0.00