Protein Peeling

Results

announcement

19/01/2005 -new version
15/08/2005 -new help

Parameters choosen


R-value: 95

Minimal size of secondary structure: 8

Minimal size of protein unit: 16

Maximal size of protein unit: 0

Pruning tree ? No   CI cut-off:  0.2

Cut-off distance between atom: 8

Delta value in logistic function: 1.5



Hierarchical process of splitting



Tree
Contact Matrix



Visualisation of Protein units at all levels


Level 0
PU
Molecule needs Java 1.4 Structure


[1-30]:
1j9ba_PU0_1-30
CI=2.20


[31-90]:
1j9ba_PU0_31-90
CI=1.84


[91-137 ]:
1j9ba_PU0_91-137
CI=2.68


Level 1
PU
Molecule needs Java 1.4 Structure


[1-30]:
1j9ba_PU1_1-30
CI=2.20


[31-90]:
1j9ba_PU1_31-90
CI=1.84


[91-115]:
1j9ba_PU1_91-115
CI=2.54


[116-137 ]:
1j9ba_PU1_116-137
CI=2.55


Level 2
PU
Molecule needs Java 1.4 Structure


[1-30]:
1j9ba_PU2_1-30
CI=2.20


[31-50]:
1j9ba_PU2_31-50
CI=0.09


[51-90]:
1j9ba_PU2_51-90
CI=1.80


[91-115]:
1j9ba_PU2_91-115
CI=2.54


[116-137 ]:
1j9ba_PU2_116-137
CI=2.55


Final level 3

PU
Molecule needs Java 1.4 Structure


[1-30]:
1j9ba_PU_1-30
CI=2.20


[31-50]:
1j9ba_PU_31-50
CI=0.09


[51-72]:
1j9ba_PU_51-72
CI=0.49


[73-90]:
1j9ba_PU_73-90
CI=0.31


[91-115]:
1j9ba_PU_91-115
CI=2.54


[116-137 ]:
1j9ba_PU_116-137
CI=2.55