Protein Peeling

Results

announcement

19/01/2005 -new version
15/08/2005 -new help

Parameters choosen


R-value: 95

Minimal size of secondary structure: 8

Minimal size of protein unit: 16

Maximal size of protein unit: 0

Pruning tree ? No   CI cut-off:  0.2

Cut-off distance between atom: 8

Delta value in logistic function: 1.5



Hierarchical process of splitting



Tree
Contact Matrix



Visualisation of Protein units at all levels


Level 0
PU
Molecule needs Java 1.4 Structure


[1-107]:
1jb3a_PU0_1-107
CI=4.97


[108-127 ]:
1jb3a_PU0_108-127
CI=0.00


Level 1
PU
Molecule needs Java 1.4 Structure


[1-39]:
1jb3a_PU1_1-39
CI=2.31


[40-55]:
1jb3a_PU1_40-55
CI=0.00


[56-107]:
1jb3a_PU1_56-107
CI=3.25


[108-127 ]:
1jb3a_PU1_108-127
CI=0.00


Level 2
PU
Molecule needs Java 1.4 Structure


[1-17]:
1jb3a_PU2_1-17
CI=0.11


[18-39]:
1jb3a_PU2_18-39
CI=1.81


[40-55]:
1jb3a_PU2_40-55
CI=0.00


[56-107]:
1jb3a_PU2_56-107
CI=3.25


[108-127 ]:
1jb3a_PU2_108-127
CI=0.00


Final level 3

PU
Molecule needs Java 1.4 Structure


[1-17]:
1jb3a_PU_1-17
CI=0.11


[18-39]:
1jb3a_PU_18-39
CI=1.81


[40-55]:
1jb3a_PU_40-55
CI=0.00


[56-76]:
1jb3a_PU_56-76
CI=0.54


[77-107]:
1jb3a_PU_77-107
CI=2.76


[108-127 ]:
1jb3a_PU_108-127
CI=0.00