Protein Peeling

Results

announcement

19/01/2005 -new version
15/08/2005 -new help

Parameters choosen


R-value: 95

Minimal size of secondary structure: 8

Minimal size of protein unit: 16

Maximal size of protein unit: 0

Pruning tree ? No   CI cut-off:  0.2

Cut-off distance between atom: 8

Delta value in logistic function: 1.5



Hierarchical process of splitting



Tree
Contact Matrix



Visualisation of Protein units at all levels


Level 0
PU
Molecule needs Java 1.4 Structure


[1-78]:
1jbea_PU0_1-78
CI=3.75


[79-126 ]:
1jbea_PU0_79-126
CI=2.06


Level 1
PU
Molecule needs Java 1.4 Structure


[1-78]:
1jbea_PU1_1-78
CI=3.75


[79-106]:
1jbea_PU1_79-106
CI=2.69


[107-126 ]:
1jbea_PU1_107-126
CI=0.09


Level 2
PU
Molecule needs Java 1.4 Structure


[1-35]:
1jbea_PU2_1-35
CI=2.39


[36-78]:
1jbea_PU2_36-78
CI=2.19


[79-106]:
1jbea_PU2_79-106
CI=2.69


[107-126 ]:
1jbea_PU2_107-126
CI=0.09


Level 3
PU
Molecule needs Java 1.4 Structure


[1-35]:
1jbea_PU3_1-35
CI=2.39


[36-62]:
1jbea_PU3_36-62
CI=1.11


[63-78]:
1jbea_PU3_63-78
CI=0.33


[79-106]:
1jbea_PU3_79-106
CI=2.69


[107-126 ]:
1jbea_PU3_107-126
CI=0.09


Final level 4

PU
Molecule needs Java 1.4 Structure


[1-19]:
1jbea_PU_1-19
CI=0.30


[20-35]:
1jbea_PU_20-35
CI=0.68


[36-62]:
1jbea_PU_36-62
CI=1.11


[63-78]:
1jbea_PU_63-78
CI=0.33


[79-106]:
1jbea_PU_79-106
CI=2.69


[107-126 ]:
1jbea_PU_107-126
CI=0.09