Protein Peeling

Results

announcement

19/01/2005 -new version
15/08/2005 -new help

Parameters choosen


R-value: 95

Minimal size of secondary structure: 8

Minimal size of protein unit: 16

Maximal size of protein unit: 0

Pruning tree ? No   CI cut-off:  0.2

Cut-off distance between atom: 8

Delta value in logistic function: 1.5



Hierarchical process of splitting



Tree
Contact Matrix



Visualisation of Protein units at all levels


Level 0
PU
Molecule needs Java 1.4 Structure


[1-32]:
1jbob_PU0_1-32
CI=1.11


[33-162 ]:
1jbob_PU0_33-162
CI=2.48


Level 1
PU
Molecule needs Java 1.4 Structure


[1-32]:
1jbob_PU1_1-32
CI=1.11


[33-59]:
1jbob_PU1_33-59
CI=0.00


[60-83]:
1jbob_PU1_60-83
CI=2.09


[84-162 ]:
1jbob_PU1_84-162
CI=1.49


Level 2
PU
Molecule needs Java 1.4 Structure


[1-32]:
1jbob_PU2_1-32
CI=1.11


[33-59]:
1jbob_PU2_33-59
CI=0.00


[60-83]:
1jbob_PU2_60-83
CI=2.09


[84-124]:
1jbob_PU2_84-124
CI=0.74


[125-162 ]:
1jbob_PU2_125-162
CI=0.88


Level 3
PU
Molecule needs Java 1.4 Structure


[1-32]:
1jbob_PU3_1-32
CI=1.11


[33-59]:
1jbob_PU3_33-59
CI=0.00


[60-83]:
1jbob_PU3_60-83
CI=2.09


[84-103]:
1jbob_PU3_84-103
CI=0.00


[104-124]:
1jbob_PU3_104-124
CI=0.09


[125-162 ]:
1jbob_PU3_125-162
CI=0.88


Final level 4

PU
Molecule needs Java 1.4 Structure


[1-32]:
1jbob_PU_1-32
CI=1.11


[33-59]:
1jbob_PU_33-59
CI=0.00


[60-83]:
1jbob_PU_60-83
CI=2.09


[84-103]:
1jbob_PU_84-103
CI=0.00


[104-124]:
1jbob_PU_104-124
CI=0.09


[125-141]:
1jbob_PU_125-141
CI=0.00


[142-162 ]:
1jbob_PU_142-162
CI=0.08