Protein Peeling

Results

announcement

19/01/2005 -new version
15/08/2005 -new help

Parameters choosen


R-value: 95

Minimal size of secondary structure: 8

Minimal size of protein unit: 16

Maximal size of protein unit: 0

Pruning tree ? No   CI cut-off:  0.2

Cut-off distance between atom: 8

Delta value in logistic function: 1.5



Hierarchical process of splitting



Tree
Contact Matrix



Visualisation of Protein units at all levels


Level 0
PU
Molecule needs Java 1.4 Structure


[1-87]:
1jc4a_PU0_1-87
CI=3.80


[88-139 ]:
1jc4a_PU0_88-139
CI=2.81


Level 1
PU
Molecule needs Java 1.4 Structure


[1-17]:
1jc4a_PU1_1-17
CI=0.00


[18-54]:
1jc4a_PU1_18-54
CI=2.30


[55-87]:
1jc4a_PU1_55-87
CI=0.85


[88-139 ]:
1jc4a_PU1_88-139
CI=2.81


Level 2
PU
Molecule needs Java 1.4 Structure


[1-17]:
1jc4a_PU2_1-17
CI=0.00


[18-34]:
1jc4a_PU2_18-34
CI=0.85


[35-54]:
1jc4a_PU2_35-54
CI=1.30


[55-87]:
1jc4a_PU2_55-87
CI=0.85


[88-139 ]:
1jc4a_PU2_88-139
CI=2.81


Level 3
PU
Molecule needs Java 1.4 Structure


[1-17]:
1jc4a_PU3_1-17
CI=0.00


[18-34]:
1jc4a_PU3_18-34
CI=0.85


[35-54]:
1jc4a_PU3_35-54
CI=1.30


[55-87]:
1jc4a_PU3_55-87
CI=0.85


[88-104]:
1jc4a_PU3_88-104
CI=0.11


[105-139 ]:
1jc4a_PU3_105-139
CI=2.85


Final level 4

PU
Molecule needs Java 1.4 Structure


[1-17]:
1jc4a_PU_1-17
CI=0.00


[18-34]:
1jc4a_PU_18-34
CI=0.85


[35-54]:
1jc4a_PU_35-54
CI=1.30


[55-87]:
1jc4a_PU_55-87
CI=0.85


[88-104]:
1jc4a_PU_88-104
CI=0.11


[105-121]:
1jc4a_PU_105-121
CI=1.64


[122-139 ]:
1jc4a_PU_122-139
CI=1.13