Protein Peeling

Results

announcement

19/01/2005 -new version
15/08/2005 -new help

Parameters choosen


R-value: 95

Minimal size of secondary structure: 8

Minimal size of protein unit: 16

Maximal size of protein unit: 0

Pruning tree ? No   CI cut-off:  0.2

Cut-off distance between atom: 8

Delta value in logistic function: 1.5



Hierarchical process of splitting



Tree
Contact Matrix



Visualisation of Protein units at all levels


Level 0
PU
Molecule needs Java 1.4 Structure


[1-64]:
1jd5a_PU0_1-64
CI=3.87


[65-105 ]:
1jd5a_PU0_65-105
CI=1.29


Level 1
PU
Molecule needs Java 1.4 Structure


[1-64]:
1jd5a_PU1_1-64
CI=3.87


[65-84]:
1jd5a_PU1_65-84
CI=0.65


[85-105 ]:
1jd5a_PU1_85-105
CI=0.26


Level 2
PU
Molecule needs Java 1.4 Structure


[1-18]:
1jd5a_PU2_1-18
CI=0.31


[19-64]:
1jd5a_PU2_19-64
CI=3.28


[65-84]:
1jd5a_PU2_65-84
CI=0.65


[85-105 ]:
1jd5a_PU2_85-105
CI=0.26


Final level 3

PU
Molecule needs Java 1.4 Structure


[1-18]:
1jd5a_PU_1-18
CI=0.31


[19-41]:
1jd5a_PU_19-41
CI=1.29


[42-64]:
1jd5a_PU_42-64
CI=1.73


[65-84]:
1jd5a_PU_65-84
CI=0.65


[85-105 ]:
1jd5a_PU_85-105
CI=0.26