Protein Peeling

Results

announcement

19/01/2005 -new version
15/08/2005 -new help

Parameters choosen


R-value: 95

Minimal size of secondary structure: 8

Minimal size of protein unit: 16

Maximal size of protein unit: 0

Pruning tree ? No   CI cut-off:  0.2

Cut-off distance between atom: 8

Delta value in logistic function: 1.5



Hierarchical process of splitting



Tree
Contact Matrix



Visualisation of Protein units at all levels


Level 0
PU
Molecule needs Java 1.4 Structure


[1-230]:
1jdw0_PU0_1-230
CI=3.92


[231-344]:
1jdw0_PU0_231-344
CI=4.00


[345-360 ]:
1jdw0_PU0_345-360
CI=0.00


Level 1
PU
Molecule needs Java 1.4 Structure


[1-230]:
1jdw0_PU1_1-230
CI=3.92


[231-276]:
1jdw0_PU1_231-276
CI=3.00


[277-344]:
1jdw0_PU1_277-344
CI=3.72


[345-360 ]:
1jdw0_PU1_345-360
CI=0.00


Level 2
PU
Molecule needs Java 1.4 Structure


[1-52]:
1jdw0_PU2_1-52
CI=1.07


[53-78]:
1jdw0_PU2_53-78
CI=0.21


[79-230]:
1jdw0_PU2_79-230
CI=3.50


[231-276]:
1jdw0_PU2_231-276
CI=3.00


[277-344]:
1jdw0_PU2_277-344
CI=3.72


[345-360 ]:
1jdw0_PU2_345-360
CI=0.00


Level 3
PU
Molecule needs Java 1.4 Structure


[1-17]:
1jdw0_PU3_1-17
CI=0.00


[18-52]:
1jdw0_PU3_18-52
CI=1.58


[53-78]:
1jdw0_PU3_53-78
CI=0.21


[79-230]:
1jdw0_PU3_79-230
CI=3.50


[231-276]:
1jdw0_PU3_231-276
CI=3.00


[277-344]:
1jdw0_PU3_277-344
CI=3.72


[345-360 ]:
1jdw0_PU3_345-360
CI=0.00


Level 4
PU
Molecule needs Java 1.4 Structure


[1-17]:
1jdw0_PU4_1-17
CI=0.00


[18-52]:
1jdw0_PU4_18-52
CI=1.58


[53-78]:
1jdw0_PU4_53-78
CI=0.21


[79-160]:
1jdw0_PU4_79-160
CI=2.56


[161-182]:
1jdw0_PU4_161-182
CI=1.16


[183-230]:
1jdw0_PU4_183-230
CI=3.39


[231-276]:
1jdw0_PU4_231-276
CI=3.00


[277-344]:
1jdw0_PU4_277-344
CI=3.72


[345-360 ]:
1jdw0_PU4_345-360
CI=0.00


Level 5
PU
Molecule needs Java 1.4 Structure


[1-17]:
1jdw0_PU5_1-17
CI=0.00


[18-52]:
1jdw0_PU5_18-52
CI=1.58


[53-78]:
1jdw0_PU5_53-78
CI=0.21


[79-160]:
1jdw0_PU5_79-160
CI=2.56


[161-182]:
1jdw0_PU5_161-182
CI=1.16


[183-230]:
1jdw0_PU5_183-230
CI=3.39


[231-276]:
1jdw0_PU5_231-276
CI=3.00


[277-298]:
1jdw0_PU5_277-298
CI=0.67


[299-331]:
1jdw0_PU5_299-331
CI=3.39


[332-344]:
1jdw0_PU5_332-344
CI=0.27


[345-360 ]:
1jdw0_PU5_345-360
CI=0.00


Level 6
PU
Molecule needs Java 1.4 Structure


[1-17]:
1jdw0_PU6_1-17
CI=0.00


[18-52]:
1jdw0_PU6_18-52
CI=1.58


[53-78]:
1jdw0_PU6_53-78
CI=0.21


[79-99]:
1jdw0_PU6_79-99
CI=1.26


[100-152]:
1jdw0_PU6_100-152
CI=2.02


[153-160]:
1jdw0_PU6_153-160
CI=0.00


[161-182]:
1jdw0_PU6_161-182
CI=1.16


[183-230]:
1jdw0_PU6_183-230
CI=3.39


[231-276]:
1jdw0_PU6_231-276
CI=3.00


[277-298]:
1jdw0_PU6_277-298
CI=0.67


[299-331]:
1jdw0_PU6_299-331
CI=3.39


[332-344]:
1jdw0_PU6_332-344
CI=0.27


[345-360 ]:
1jdw0_PU6_345-360
CI=0.00


Level 7
PU
Molecule needs Java 1.4 Structure


[1-17]:
1jdw0_PU7_1-17
CI=0.00


[18-52]:
1jdw0_PU7_18-52
CI=1.58


[53-78]:
1jdw0_PU7_53-78
CI=0.21


[79-99]:
1jdw0_PU7_79-99
CI=1.26


[100-132]:
1jdw0_PU7_100-132
CI=1.71


[133-152]:
1jdw0_PU7_133-152
CI=0.09


[153-160]:
1jdw0_PU7_153-160
CI=0.00


[161-182]:
1jdw0_PU7_161-182
CI=1.16


[183-230]:
1jdw0_PU7_183-230
CI=3.39


[231-276]:
1jdw0_PU7_231-276
CI=3.00


[277-298]:
1jdw0_PU7_277-298
CI=0.67


[299-331]:
1jdw0_PU7_299-331
CI=3.39


[332-344]:
1jdw0_PU7_332-344
CI=0.27


[345-360 ]:
1jdw0_PU7_345-360
CI=0.00


Level 8
PU
Molecule needs Java 1.4 Structure


[1-17]:
1jdw0_PU8_1-17
CI=0.00


[18-52]:
1jdw0_PU8_18-52
CI=1.58


[53-78]:
1jdw0_PU8_53-78
CI=0.21


[79-99]:
1jdw0_PU8_79-99
CI=1.26


[100-132]:
1jdw0_PU8_100-132
CI=1.71


[133-152]:
1jdw0_PU8_133-152
CI=0.09


[153-160]:
1jdw0_PU8_153-160
CI=0.00


[161-182]:
1jdw0_PU8_161-182
CI=1.16


[183-230]:
1jdw0_PU8_183-230
CI=3.39


[231-260]:
1jdw0_PU8_231-260
CI=2.02


[261-276]:
1jdw0_PU8_261-276
CI=0.56


[277-298]:
1jdw0_PU8_277-298
CI=0.67


[299-331]:
1jdw0_PU8_299-331
CI=3.39


[332-344]:
1jdw0_PU8_332-344
CI=0.27


[345-360 ]:
1jdw0_PU8_345-360
CI=0.00


Level 9
PU
Molecule needs Java 1.4 Structure


[1-17]:
1jdw0_PU9_1-17
CI=0.00


[18-52]:
1jdw0_PU9_18-52
CI=1.58


[53-78]:
1jdw0_PU9_53-78
CI=0.21


[79-99]:
1jdw0_PU9_79-99
CI=1.26


[100-132]:
1jdw0_PU9_100-132
CI=1.71


[133-152]:
1jdw0_PU9_133-152
CI=0.09


[153-160]:
1jdw0_PU9_153-160
CI=0.00


[161-182]:
1jdw0_PU9_161-182
CI=1.16


[183-214]:
1jdw0_PU9_183-214
CI=3.02


[215-230]:
1jdw0_PU9_215-230
CI=0.45


[231-260]:
1jdw0_PU9_231-260
CI=2.02


[261-276]:
1jdw0_PU9_261-276
CI=0.56


[277-298]:
1jdw0_PU9_277-298
CI=0.67


[299-331]:
1jdw0_PU9_299-331
CI=3.39


[332-344]:
1jdw0_PU9_332-344
CI=0.27


[345-360 ]:
1jdw0_PU9_345-360
CI=0.00


Final level 10

PU
Molecule needs Java 1.4 Structure


[1-17]:
1jdw0_PU_1-17
CI=0.00


[18-36]:
1jdw0_PU_18-36
CI=0.09


[37-52]:
1jdw0_PU_37-52
CI=0.00


[53-78]:
1jdw0_PU_53-78
CI=0.21


[79-99]:
1jdw0_PU_79-99
CI=1.26


[100-132]:
1jdw0_PU_100-132
CI=1.71


[133-152]:
1jdw0_PU_133-152
CI=0.09


[153-160]:
1jdw0_PU_153-160
CI=0.00


[161-182]:
1jdw0_PU_161-182
CI=1.16


[183-214]:
1jdw0_PU_183-214
CI=3.02


[215-230]:
1jdw0_PU_215-230
CI=0.45


[231-260]:
1jdw0_PU_231-260
CI=2.02


[261-276]:
1jdw0_PU_261-276
CI=0.56


[277-298]:
1jdw0_PU_277-298
CI=0.67


[299-331]:
1jdw0_PU_299-331
CI=3.39


[332-344]:
1jdw0_PU_332-344
CI=0.27


[345-360 ]:
1jdw0_PU_345-360
CI=0.00