Protein Peeling

Results

announcement

19/01/2005 -new version
15/08/2005 -new help

Parameters choosen


R-value: 95

Minimal size of secondary structure: 8

Minimal size of protein unit: 16

Maximal size of protein unit: 0

Pruning tree ? No   CI cut-off:  0.2

Cut-off distance between atom: 8

Delta value in logistic function: 1.5



Hierarchical process of splitting



Tree
Contact Matrix



Visualisation of Protein units at all levels


Level 0
PU
Molecule needs Java 1.4 Structure


[1-101]:
1jf8a_PU0_1-101
CI=4.82


[102-130 ]:
1jf8a_PU0_102-130
CI=0.77


Level 1
PU
Molecule needs Java 1.4 Structure


[1-42]:
1jf8a_PU1_1-42
CI=3.79


[43-61]:
1jf8a_PU1_43-61
CI=1.65


[62-101]:
1jf8a_PU1_62-101
CI=1.95


[102-130 ]:
1jf8a_PU1_102-130
CI=0.77


Level 2
PU
Molecule needs Java 1.4 Structure


[1-42]:
1jf8a_PU2_1-42
CI=3.79


[43-61]:
1jf8a_PU2_43-61
CI=1.65


[62-78]:
1jf8a_PU2_62-78
CI=0.10


[79-101]:
1jf8a_PU2_79-101
CI=1.31


[102-130 ]:
1jf8a_PU2_102-130
CI=0.77


Final level 3

PU
Molecule needs Java 1.4 Structure


[1-21]:
1jf8a_PU_1-21
CI=0.80


[22-42]:
1jf8a_PU_22-42
CI=0.52


[43-61]:
1jf8a_PU_43-61
CI=1.65


[62-78]:
1jf8a_PU_62-78
CI=0.10


[79-101]:
1jf8a_PU_79-101
CI=1.31


[102-130 ]:
1jf8a_PU_102-130
CI=0.77