Protein Peeling

Results

announcement

19/01/2005 -new version
15/08/2005 -new help

Parameters choosen


R-value: 95

Minimal size of secondary structure: 8

Minimal size of protein unit: 16

Maximal size of protein unit: 0

Pruning tree ? No   CI cut-off:  0.2

Cut-off distance between atom: 8

Delta value in logistic function: 1.5



Hierarchical process of splitting



Tree
Contact Matrix



Visualisation of Protein units at all levels


Level 0
PU
Molecule needs Java 1.4 Structure


[1-71]:
1jh6a_PU0_1-71
CI=1.69


[72-150]:
1jh6a_PU0_72-150
CI=2.86


[151-181 ]:
1jh6a_PU0_151-181
CI=2.76


Level 1
PU
Molecule needs Java 1.4 Structure


[1-16]:
1jh6a_PU1_1-16
CI=0.00


[17-41]:
1jh6a_PU1_17-41
CI=0.60


[42-71]:
1jh6a_PU1_42-71
CI=0.00


[72-150]:
1jh6a_PU1_72-150
CI=2.86


[151-181 ]:
1jh6a_PU1_151-181
CI=2.76


Level 2
PU
Molecule needs Java 1.4 Structure


[1-16]:
1jh6a_PU2_1-16
CI=0.00


[17-41]:
1jh6a_PU2_17-41
CI=0.60


[42-71]:
1jh6a_PU2_42-71
CI=0.00


[72-92]:
1jh6a_PU2_72-92
CI=2.79


[93-117]:
1jh6a_PU2_93-117
CI=0.43


[118-150]:
1jh6a_PU2_118-150
CI=0.11


[151-181 ]:
1jh6a_PU2_151-181
CI=2.76


Final level 3

PU
Molecule needs Java 1.4 Structure


[1-16]:
1jh6a_PU_1-16
CI=0.00


[17-41]:
1jh6a_PU_17-41
CI=0.60


[42-71]:
1jh6a_PU_42-71
CI=0.00


[72-92]:
1jh6a_PU_72-92
CI=2.79


[93-117]:
1jh6a_PU_93-117
CI=0.43


[118-134]:
1jh6a_PU_118-134
CI=0.10


[135-150]:
1jh6a_PU_135-150
CI=0.12


[151-181 ]:
1jh6a_PU_151-181
CI=2.76