Protein Peeling

Results

announcement

19/01/2005 -new version
15/08/2005 -new help

Parameters choosen


R-value: 95

Minimal size of secondary structure: 8

Minimal size of protein unit: 16

Maximal size of protein unit: 0

Pruning tree ? No   CI cut-off:  0.2

Cut-off distance between atom: 8

Delta value in logistic function: 1.5



Hierarchical process of splitting



Tree
Contact Matrix



Visualisation of Protein units at all levels


Level 0
PU
Molecule needs Java 1.4 Structure


[1-37]:
1jhga_PU0_1-37
CI=0.35


[38-101 ]:
1jhga_PU0_38-101
CI=0.77


Level 1
PU
Molecule needs Java 1.4 Structure


[1-17]:
1jhga_PU1_1-17
CI=0.00


[18-37]:
1jhga_PU1_18-37
CI=0.64


[38-101 ]:
1jhga_PU1_38-101
CI=0.77


Level 2
PU
Molecule needs Java 1.4 Structure


[1-17]:
1jhga_PU2_1-17
CI=0.00


[18-37]:
1jhga_PU2_18-37
CI=0.64


[38-79]:
1jhga_PU2_38-79
CI=0.80


[80-101 ]:
1jhga_PU2_80-101
CI=0.08


Final level 3

PU
Molecule needs Java 1.4 Structure


[1-17]:
1jhga_PU_1-17
CI=0.00


[18-37]:
1jhga_PU_18-37
CI=0.64


[38-58]:
1jhga_PU_38-58
CI=0.00


[59-79]:
1jhga_PU_59-79
CI=0.70


[80-101 ]:
1jhga_PU_80-101
CI=0.08