Protein Peeling

Results

announcement

19/01/2005 -new version
15/08/2005 -new help

Parameters choosen


R-value: 95

Minimal size of secondary structure: 8

Minimal size of protein unit: 16

Maximal size of protein unit: 0

Pruning tree ? No   CI cut-off:  0.2

Cut-off distance between atom: 8

Delta value in logistic function: 1.5



Hierarchical process of splitting



Tree
Contact Matrix



Visualisation of Protein units at all levels


Level 0
PU
Molecule needs Java 1.4 Structure


[1-33]:
1jhja_PU0_1-33
CI=0.17


[34-57]:
1jhja_PU0_34-57
CI=2.28


[58-161 ]:
1jhja_PU0_58-161
CI=5.44


Level 1
PU
Molecule needs Java 1.4 Structure


[1-17]:
1jhja_PU1_1-17
CI=0.00


[18-33]:
1jhja_PU1_18-33
CI=0.00


[34-57]:
1jhja_PU1_34-57
CI=2.28


[58-161 ]:
1jhja_PU1_58-161
CI=5.44


Level 2
PU
Molecule needs Java 1.4 Structure


[1-17]:
1jhja_PU2_1-17
CI=0.00


[18-33]:
1jhja_PU2_18-33
CI=0.00


[34-57]:
1jhja_PU2_34-57
CI=2.28


[58-88]:
1jhja_PU2_58-88
CI=0.06


[89-137]:
1jhja_PU2_89-137
CI=3.22


[138-161 ]:
1jhja_PU2_138-161
CI=0.23


Final level 3

PU
Molecule needs Java 1.4 Structure


[1-17]:
1jhja_PU_1-17
CI=0.00


[18-33]:
1jhja_PU_18-33
CI=0.00


[34-57]:
1jhja_PU_34-57
CI=2.28


[58-88]:
1jhja_PU_58-88
CI=0.06


[89-121]:
1jhja_PU_89-121
CI=2.43


[122-137]:
1jhja_PU_122-137
CI=0.69


[138-161 ]:
1jhja_PU_138-161
CI=0.23