Protein Peeling

Results

announcement

19/01/2005 -new version
15/08/2005 -new help

Parameters choosen


R-value: 95

Minimal size of secondary structure: 8

Minimal size of protein unit: 16

Maximal size of protein unit: 0

Pruning tree ? No   CI cut-off:  0.2

Cut-off distance between atom: 8

Delta value in logistic function: 1.5



Hierarchical process of splitting



Tree
Contact Matrix



Visualisation of Protein units at all levels


Level 0
PU
Molecule needs Java 1.4 Structure


[1-49]:
1ji7a_PU0_1-49
CI=2.05


[50-76 ]:
1ji7a_PU0_50-76
CI=1.46


Final level 1

PU
Molecule needs Java 1.4 Structure


[1-23]:
1ji7a_PU_1-23
CI=0.72


[24-49]:
1ji7a_PU_24-49
CI=0.72


[50-76 ]:
1ji7a_PU_50-76
CI=1.46