Protein Peeling

Results

announcement

19/01/2005 -new version
15/08/2005 -new help

Parameters choosen


R-value: 95

Minimal size of secondary structure: 8

Minimal size of protein unit: 16

Maximal size of protein unit: 0

Pruning tree ? No   CI cut-off:  0.2

Cut-off distance between atom: 8

Delta value in logistic function: 1.5



Hierarchical process of splitting



Tree
Contact Matrix



Visualisation of Protein units at all levels


Level 0
PU
Molecule needs Java 1.4 Structure


[1-59]:
1jida_PU0_1-59
CI=2.53


[60-75]:
1jida_PU0_60-75
CI=1.38


[76-114 ]:
1jida_PU0_76-114
CI=0.87


Level 1
PU
Molecule needs Java 1.4 Structure


[1-40]:
1jida_PU1_1-40
CI=2.79


[41-59]:
1jida_PU1_41-59
CI=0.98


[60-75]:
1jida_PU1_60-75
CI=1.38


[76-114 ]:
1jida_PU1_76-114
CI=0.87


Level 2
PU
Molecule needs Java 1.4 Structure


[1-40]:
1jida_PU2_1-40
CI=2.79


[41-59]:
1jida_PU2_41-59
CI=0.98


[60-75]:
1jida_PU2_60-75
CI=1.38


[76-96]:
1jida_PU2_76-96
CI=1.16


[97-114 ]:
1jida_PU2_97-114
CI=0.00


Final level 3

PU
Molecule needs Java 1.4 Structure


[1-19]:
1jida_PU_1-19
CI=0.40


[20-40]:
1jida_PU_20-40
CI=2.64


[41-59]:
1jida_PU_41-59
CI=0.98


[60-75]:
1jida_PU_60-75
CI=1.38


[76-96]:
1jida_PU_76-96
CI=1.16


[97-114 ]:
1jida_PU_97-114
CI=0.00