Protein Peeling

Results

announcement

19/01/2005 -new version
15/08/2005 -new help

Parameters choosen


R-value: 95

Minimal size of secondary structure: 8

Minimal size of protein unit: 16

Maximal size of protein unit: 0

Pruning tree ? No   CI cut-off:  0.2

Cut-off distance between atom: 8

Delta value in logistic function: 1.5



Hierarchical process of splitting



Tree
Contact Matrix



Visualisation of Protein units at all levels


Level 0
PU
Molecule needs Java 1.4 Structure


[1-90]:
1jiga_PU0_1-90
CI=2.72


[91-146 ]:
1jiga_PU0_91-146
CI=1.28


Level 1
PU
Molecule needs Java 1.4 Structure


[1-23]:
1jiga_PU1_1-23
CI=0.00


[24-48]:
1jiga_PU1_24-48
CI=1.58


[49-90]:
1jiga_PU1_49-90
CI=0.45


[91-146 ]:
1jiga_PU1_91-146
CI=1.28


Level 2
PU
Molecule needs Java 1.4 Structure


[1-23]:
1jiga_PU2_1-23
CI=0.00


[24-48]:
1jiga_PU2_24-48
CI=1.58


[49-68]:
1jiga_PU2_49-68
CI=0.73


[69-90]:
1jiga_PU2_69-90
CI=0.09


[91-146 ]:
1jiga_PU2_91-146
CI=1.28


Level 3
PU
Molecule needs Java 1.4 Structure


[1-23]:
1jiga_PU3_1-23
CI=0.00


[24-48]:
1jiga_PU3_24-48
CI=1.58


[49-68]:
1jiga_PU3_49-68
CI=0.73


[69-90]:
1jiga_PU3_69-90
CI=0.09


[91-107]:
1jiga_PU3_91-107
CI=0.00


[108-146 ]:
1jiga_PU3_108-146
CI=0.72


Final level 4

PU
Molecule needs Java 1.4 Structure


[1-23]:
1jiga_PU_1-23
CI=0.00


[24-48]:
1jiga_PU_24-48
CI=1.58


[49-68]:
1jiga_PU_49-68
CI=0.73


[69-90]:
1jiga_PU_69-90
CI=0.09


[91-107]:
1jiga_PU_91-107
CI=0.00


[108-130]:
1jiga_PU_108-130
CI=1.12


[131-146 ]:
1jiga_PU_131-146
CI=0.00