Protein Peeling

Results

announcement

19/01/2005 -new version
15/08/2005 -new help

Parameters choosen


R-value: 95

Minimal size of secondary structure: 8

Minimal size of protein unit: 16

Maximal size of protein unit: 0

Pruning tree ? No   CI cut-off:  0.2

Cut-off distance between atom: 8

Delta value in logistic function: 1.5



Hierarchical process of splitting



Tree
Contact Matrix



Visualisation of Protein units at all levels


Level 0
PU
Molecule needs Java 1.4 Structure


[1-50]:
1jkea_PU0_1-50
CI=2.88


[51-70]:
1jkea_PU0_51-70
CI=2.81


[71-145 ]:
1jkea_PU0_71-145
CI=1.59


Level 1
PU
Molecule needs Java 1.4 Structure


[1-50]:
1jkea_PU1_1-50
CI=2.88


[51-70]:
1jkea_PU1_51-70
CI=2.81


[71-129]:
1jkea_PU1_71-129
CI=1.95


[130-145 ]:
1jkea_PU1_130-145
CI=0.00


Level 2
PU
Molecule needs Java 1.4 Structure


[1-32]:
1jkea_PU2_1-32
CI=3.63


[33-50]:
1jkea_PU2_33-50
CI=0.10


[51-70]:
1jkea_PU2_51-70
CI=2.81


[71-129]:
1jkea_PU2_71-129
CI=1.95


[130-145 ]:
1jkea_PU2_130-145
CI=0.00


Level 3
PU
Molecule needs Java 1.4 Structure


[1-32]:
1jkea_PU3_1-32
CI=3.63


[33-50]:
1jkea_PU3_33-50
CI=0.10


[51-70]:
1jkea_PU3_51-70
CI=2.81


[71-96]:
1jkea_PU3_71-96
CI=1.30


[97-129]:
1jkea_PU3_97-129
CI=0.63


[130-145 ]:
1jkea_PU3_130-145
CI=0.00


Final level 4

PU
Molecule needs Java 1.4 Structure


[1-32]:
1jkea_PU_1-32
CI=3.63


[33-50]:
1jkea_PU_33-50
CI=0.10


[51-70]:
1jkea_PU_51-70
CI=2.81


[71-96]:
1jkea_PU_71-96
CI=1.30


[97-113]:
1jkea_PU_97-113
CI=0.00


[114-129]:
1jkea_PU_114-129
CI=0.23


[130-145 ]:
1jkea_PU_130-145
CI=0.00