Protein Peeling

Results

announcement

19/01/2005 -new version
15/08/2005 -new help

Parameters choosen


R-value: 95

Minimal size of secondary structure: 8

Minimal size of protein unit: 16

Maximal size of protein unit: 0

Pruning tree ? No   CI cut-off:  0.2

Cut-off distance between atom: 8

Delta value in logistic function: 1.5



Hierarchical process of splitting



Tree
Contact Matrix



Visualisation of Protein units at all levels


Level 0
PU
Molecule needs Java 1.4 Structure


[1-20]:
1jkga_PU0_1-20
CI=0.00


[21-67]:
1jkga_PU0_21-67
CI=2.20


[68-139 ]:
1jkga_PU0_68-139
CI=4.06


Level 1
PU
Molecule needs Java 1.4 Structure


[1-20]:
1jkga_PU1_1-20
CI=0.00


[21-37]:
1jkga_PU1_21-37
CI=1.39


[38-67]:
1jkga_PU1_38-67
CI=1.59


[68-139 ]:
1jkga_PU1_68-139
CI=4.06


Level 2
PU
Molecule needs Java 1.4 Structure


[1-20]:
1jkga_PU2_1-20
CI=0.00


[21-37]:
1jkga_PU2_21-37
CI=1.39


[38-67]:
1jkga_PU2_38-67
CI=1.59


[68-110]:
1jkga_PU2_68-110
CI=3.06


[111-139 ]:
1jkga_PU2_111-139
CI=2.18


Final level 3

PU
Molecule needs Java 1.4 Structure


[1-20]:
1jkga_PU_1-20
CI=0.00


[21-37]:
1jkga_PU_21-37
CI=1.39


[38-67]:
1jkga_PU_38-67
CI=1.59


[68-94]:
1jkga_PU_68-94
CI=1.84


[95-110]:
1jkga_PU_95-110
CI=2.21


[111-139 ]:
1jkga_PU_111-139
CI=2.18