Protein Peeling

Results

announcement

19/01/2005 -new version
15/08/2005 -new help

Parameters choosen


R-value: 95

Minimal size of secondary structure: 8

Minimal size of protein unit: 16

Maximal size of protein unit: 0

Pruning tree ? No   CI cut-off:  0.2

Cut-off distance between atom: 8

Delta value in logistic function: 1.5



Hierarchical process of splitting



Tree
Contact Matrix



Visualisation of Protein units at all levels


Level 0
PU
Molecule needs Java 1.4 Structure


[1-33]:
1jkmb_PU0_1-33
CI=1.14


[34-358 ]:
1jkmb_PU0_34-358
CI=4.79


Level 1
PU
Molecule needs Java 1.4 Structure


[1-33]:
1jkmb_PU1_1-33
CI=1.14


[34-218]:
1jkmb_PU1_34-218
CI=3.85


[219-326]:
1jkmb_PU1_219-326
CI=3.77


[327-358 ]:
1jkmb_PU1_327-358
CI=0.76


Level 2
PU
Molecule needs Java 1.4 Structure


[1-33]:
1jkmb_PU2_1-33
CI=1.14


[34-51]:
1jkmb_PU2_34-51
CI=0.51


[52-218]:
1jkmb_PU2_52-218
CI=4.18


[219-326]:
1jkmb_PU2_219-326
CI=3.77


[327-358 ]:
1jkmb_PU2_327-358
CI=0.76


Level 3
PU
Molecule needs Java 1.4 Structure


[1-33]:
1jkmb_PU3_1-33
CI=1.14


[34-51]:
1jkmb_PU3_34-51
CI=0.51


[52-73]:
1jkmb_PU3_52-73
CI=0.00


[74-218]:
1jkmb_PU3_74-218
CI=4.51


[219-326]:
1jkmb_PU3_219-326
CI=3.77


[327-358 ]:
1jkmb_PU3_327-358
CI=0.76


Level 4
PU
Molecule needs Java 1.4 Structure


[1-33]:
1jkmb_PU4_1-33
CI=1.14


[34-51]:
1jkmb_PU4_34-51
CI=0.51


[52-73]:
1jkmb_PU4_52-73
CI=0.00


[74-218]:
1jkmb_PU4_74-218
CI=4.51


[219-277]:
1jkmb_PU4_219-277
CI=1.84


[278-326]:
1jkmb_PU4_278-326
CI=3.76


[327-358 ]:
1jkmb_PU4_327-358
CI=0.76


Level 5
PU
Molecule needs Java 1.4 Structure


[1-33]:
1jkmb_PU5_1-33
CI=1.14


[34-51]:
1jkmb_PU5_34-51
CI=0.51


[52-73]:
1jkmb_PU5_52-73
CI=0.00


[74-218]:
1jkmb_PU5_74-218
CI=4.51


[219-260]:
1jkmb_PU5_219-260
CI=1.56


[261-277]:
1jkmb_PU5_261-277
CI=1.08


[278-326]:
1jkmb_PU5_278-326
CI=3.76


[327-358 ]:
1jkmb_PU5_327-358
CI=0.76


Level 6
PU
Molecule needs Java 1.4 Structure


[1-17]:
1jkmb_PU6_1-17
CI=0.75


[18-33]:
1jkmb_PU6_18-33
CI=0.34


[34-51]:
1jkmb_PU6_34-51
CI=0.51


[52-73]:
1jkmb_PU6_52-73
CI=0.00


[74-218]:
1jkmb_PU6_74-218
CI=4.51


[219-260]:
1jkmb_PU6_219-260
CI=1.56


[261-277]:
1jkmb_PU6_261-277
CI=1.08


[278-326]:
1jkmb_PU6_278-326
CI=3.76


[327-358 ]:
1jkmb_PU6_327-358
CI=0.76


Level 7
PU
Molecule needs Java 1.4 Structure


[1-17]:
1jkmb_PU7_1-17
CI=0.75


[18-33]:
1jkmb_PU7_18-33
CI=0.34


[34-51]:
1jkmb_PU7_34-51
CI=0.51


[52-73]:
1jkmb_PU7_52-73
CI=0.00


[74-168]:
1jkmb_PU7_74-168
CI=3.70


[169-218]:
1jkmb_PU7_169-218
CI=2.48


[219-260]:
1jkmb_PU7_219-260
CI=1.56


[261-277]:
1jkmb_PU7_261-277
CI=1.08


[278-326]:
1jkmb_PU7_278-326
CI=3.76


[327-358 ]:
1jkmb_PU7_327-358
CI=0.76


Level 8
PU
Molecule needs Java 1.4 Structure


[1-17]:
1jkmb_PU8_1-17
CI=0.75


[18-33]:
1jkmb_PU8_18-33
CI=0.34


[34-51]:
1jkmb_PU8_34-51
CI=0.51


[52-73]:
1jkmb_PU8_52-73
CI=0.00


[74-145]:
1jkmb_PU8_74-145
CI=3.26


[146-168]:
1jkmb_PU8_146-168
CI=1.55


[169-218]:
1jkmb_PU8_169-218
CI=2.48


[219-260]:
1jkmb_PU8_219-260
CI=1.56


[261-277]:
1jkmb_PU8_261-277
CI=1.08


[278-326]:
1jkmb_PU8_278-326
CI=3.76


[327-358 ]:
1jkmb_PU8_327-358
CI=0.76


Level 9
PU
Molecule needs Java 1.4 Structure


[1-17]:
1jkmb_PU9_1-17
CI=0.75


[18-33]:
1jkmb_PU9_18-33
CI=0.34


[34-51]:
1jkmb_PU9_34-51
CI=0.51


[52-73]:
1jkmb_PU9_52-73
CI=0.00


[74-145]:
1jkmb_PU9_74-145
CI=3.26


[146-168]:
1jkmb_PU9_146-168
CI=1.55


[169-188]:
1jkmb_PU9_169-188
CI=0.27


[189-218]:
1jkmb_PU9_189-218
CI=1.74


[219-260]:
1jkmb_PU9_219-260
CI=1.56


[261-277]:
1jkmb_PU9_261-277
CI=1.08


[278-326]:
1jkmb_PU9_278-326
CI=3.76


[327-358 ]:
1jkmb_PU9_327-358
CI=0.76


Level 10
PU
Molecule needs Java 1.4 Structure


[1-17]:
1jkmb_PU10_1-17
CI=0.75


[18-33]:
1jkmb_PU10_18-33
CI=0.34


[34-51]:
1jkmb_PU10_34-51
CI=0.51


[52-73]:
1jkmb_PU10_52-73
CI=0.00


[74-104]:
1jkmb_PU10_74-104
CI=2.23


[105-145]:
1jkmb_PU10_105-145
CI=1.82


[146-168]:
1jkmb_PU10_146-168
CI=1.55


[169-188]:
1jkmb_PU10_169-188
CI=0.27


[189-218]:
1jkmb_PU10_189-218
CI=1.74


[219-260]:
1jkmb_PU10_219-260
CI=1.56


[261-277]:
1jkmb_PU10_261-277
CI=1.08


[278-326]:
1jkmb_PU10_278-326
CI=3.76


[327-358 ]:
1jkmb_PU10_327-358
CI=0.76


Level 11
PU
Molecule needs Java 1.4 Structure


[1-17]:
1jkmb_PU11_1-17
CI=0.75


[18-33]:
1jkmb_PU11_18-33
CI=0.34


[34-51]:
1jkmb_PU11_34-51
CI=0.51


[52-73]:
1jkmb_PU11_52-73
CI=0.00


[74-104]:
1jkmb_PU11_74-104
CI=2.23


[105-145]:
1jkmb_PU11_105-145
CI=1.82


[146-168]:
1jkmb_PU11_146-168
CI=1.55


[169-188]:
1jkmb_PU11_169-188
CI=0.27


[189-218]:
1jkmb_PU11_189-218
CI=1.74


[219-243]:
1jkmb_PU11_219-243
CI=0.66


[244-260]:
1jkmb_PU11_244-260
CI=0.11


[261-277]:
1jkmb_PU11_261-277
CI=1.08


[278-326]:
1jkmb_PU11_278-326
CI=3.76


[327-358 ]:
1jkmb_PU11_327-358
CI=0.76


Level 12
PU
Molecule needs Java 1.4 Structure


[1-17]:
1jkmb_PU12_1-17
CI=0.75


[18-33]:
1jkmb_PU12_18-33
CI=0.34


[34-51]:
1jkmb_PU12_34-51
CI=0.51


[52-73]:
1jkmb_PU12_52-73
CI=0.00


[74-104]:
1jkmb_PU12_74-104
CI=2.23


[105-121]:
1jkmb_PU12_105-121
CI=0.00


[122-145]:
1jkmb_PU12_122-145
CI=0.70


[146-168]:
1jkmb_PU12_146-168
CI=1.55


[169-188]:
1jkmb_PU12_169-188
CI=0.27


[189-218]:
1jkmb_PU12_189-218
CI=1.74


[219-243]:
1jkmb_PU12_219-243
CI=0.66


[244-260]:
1jkmb_PU12_244-260
CI=0.11


[261-277]:
1jkmb_PU12_261-277
CI=1.08


[278-326]:
1jkmb_PU12_278-326
CI=3.76


[327-358 ]:
1jkmb_PU12_327-358
CI=0.76


Final level 13

PU
Molecule needs Java 1.4 Structure


[1-17]:
1jkmb_PU_1-17
CI=0.75


[18-33]:
1jkmb_PU_18-33
CI=0.34


[34-51]:
1jkmb_PU_34-51
CI=0.51


[52-73]:
1jkmb_PU_52-73
CI=0.00


[74-104]:
1jkmb_PU_74-104
CI=2.23


[105-121]:
1jkmb_PU_105-121
CI=0.00


[122-145]:
1jkmb_PU_122-145
CI=0.70


[146-168]:
1jkmb_PU_146-168
CI=1.55


[169-188]:
1jkmb_PU_169-188
CI=0.27


[189-218]:
1jkmb_PU_189-218
CI=1.74


[219-243]:
1jkmb_PU_219-243
CI=0.66


[244-260]:
1jkmb_PU_244-260
CI=0.11


[261-277]:
1jkmb_PU_261-277
CI=1.08


[278-303]:
1jkmb_PU_278-303
CI=0.87


[304-326]:
1jkmb_PU_304-326
CI=0.64


[327-358 ]:
1jkmb_PU_327-358
CI=0.76