Protein Peeling

Results

announcement

19/01/2005 -new version
15/08/2005 -new help

Parameters choosen


R-value: 95

Minimal size of secondary structure: 8

Minimal size of protein unit: 16

Maximal size of protein unit: 0

Pruning tree ? No   CI cut-off:  0.2

Cut-off distance between atom: 8

Delta value in logistic function: 1.5



Hierarchical process of splitting



Tree
Contact Matrix



Visualisation of Protein units at all levels


Level 0
PU
Molecule needs Java 1.4 Structure


[1-45]:
1jlna_PU0_1-45
CI=0.84


[46-232]:
1jlna_PU0_46-232
CI=3.94


[233-297 ]:
1jlna_PU0_233-297
CI=2.15


Level 1
PU
Molecule needs Java 1.4 Structure


[1-45]:
1jlna_PU1_1-45
CI=0.84


[46-126]:
1jlna_PU1_46-126
CI=2.81


[127-220]:
1jlna_PU1_127-220
CI=3.10


[221-232]:
1jlna_PU1_221-232
CI=0.00


[233-297 ]:
1jlna_PU1_233-297
CI=2.15


Level 2
PU
Molecule needs Java 1.4 Structure


[1-45]:
1jlna_PU2_1-45
CI=0.84


[46-126]:
1jlna_PU2_46-126
CI=2.81


[127-144]:
1jlna_PU2_127-144
CI=1.13


[145-187]:
1jlna_PU2_145-187
CI=3.23


[188-220]:
1jlna_PU2_188-220
CI=0.33


[221-232]:
1jlna_PU2_221-232
CI=0.00


[233-297 ]:
1jlna_PU2_233-297
CI=2.15


Level 3
PU
Molecule needs Java 1.4 Structure


[1-17]:
1jlna_PU3_1-17
CI=0.32


[18-45]:
1jlna_PU3_18-45
CI=0.26


[46-126]:
1jlna_PU3_46-126
CI=2.81


[127-144]:
1jlna_PU3_127-144
CI=1.13


[145-187]:
1jlna_PU3_145-187
CI=3.23


[188-220]:
1jlna_PU3_188-220
CI=0.33


[221-232]:
1jlna_PU3_221-232
CI=0.00


[233-297 ]:
1jlna_PU3_233-297
CI=2.15


Level 4
PU
Molecule needs Java 1.4 Structure


[1-17]:
1jlna_PU4_1-17
CI=0.32


[18-45]:
1jlna_PU4_18-45
CI=0.26


[46-126]:
1jlna_PU4_46-126
CI=2.81


[127-144]:
1jlna_PU4_127-144
CI=1.13


[145-187]:
1jlna_PU4_145-187
CI=3.23


[188-204]:
1jlna_PU4_188-204
CI=0.22


[205-220]:
1jlna_PU4_205-220
CI=0.00


[221-232]:
1jlna_PU4_221-232
CI=0.00


[233-297 ]:
1jlna_PU4_233-297
CI=2.15


Level 5
PU
Molecule needs Java 1.4 Structure


[1-17]:
1jlna_PU5_1-17
CI=0.32


[18-45]:
1jlna_PU5_18-45
CI=0.26


[46-66]:
1jlna_PU5_46-66
CI=0.27


[67-126]:
1jlna_PU5_67-126
CI=2.70


[127-144]:
1jlna_PU5_127-144
CI=1.13


[145-187]:
1jlna_PU5_145-187
CI=3.23


[188-204]:
1jlna_PU5_188-204
CI=0.22


[205-220]:
1jlna_PU5_205-220
CI=0.00


[221-232]:
1jlna_PU5_221-232
CI=0.00


[233-297 ]:
1jlna_PU5_233-297
CI=2.15


Level 6
PU
Molecule needs Java 1.4 Structure


[1-17]:
1jlna_PU6_1-17
CI=0.32


[18-45]:
1jlna_PU6_18-45
CI=0.26


[46-66]:
1jlna_PU6_46-66
CI=0.27


[67-107]:
1jlna_PU6_67-107
CI=2.99


[108-126]:
1jlna_PU6_108-126
CI=0.19


[127-144]:
1jlna_PU6_127-144
CI=1.13


[145-187]:
1jlna_PU6_145-187
CI=3.23


[188-204]:
1jlna_PU6_188-204
CI=0.22


[205-220]:
1jlna_PU6_205-220
CI=0.00


[221-232]:
1jlna_PU6_221-232
CI=0.00


[233-297 ]:
1jlna_PU6_233-297
CI=2.15


Level 7
PU
Molecule needs Java 1.4 Structure


[1-17]:
1jlna_PU7_1-17
CI=0.32


[18-45]:
1jlna_PU7_18-45
CI=0.26


[46-66]:
1jlna_PU7_46-66
CI=0.27


[67-88]:
1jlna_PU7_67-88
CI=1.10


[89-107]:
1jlna_PU7_89-107
CI=2.88


[108-126]:
1jlna_PU7_108-126
CI=0.19


[127-144]:
1jlna_PU7_127-144
CI=1.13


[145-187]:
1jlna_PU7_145-187
CI=3.23


[188-204]:
1jlna_PU7_188-204
CI=0.22


[205-220]:
1jlna_PU7_205-220
CI=0.00


[221-232]:
1jlna_PU7_221-232
CI=0.00


[233-297 ]:
1jlna_PU7_233-297
CI=2.15


Level 8
PU
Molecule needs Java 1.4 Structure


[1-17]:
1jlna_PU8_1-17
CI=0.32


[18-45]:
1jlna_PU8_18-45
CI=0.26


[46-66]:
1jlna_PU8_46-66
CI=0.27


[67-88]:
1jlna_PU8_67-88
CI=1.10


[89-107]:
1jlna_PU8_89-107
CI=2.88


[108-126]:
1jlna_PU8_108-126
CI=0.19


[127-144]:
1jlna_PU8_127-144
CI=1.13


[145-187]:
1jlna_PU8_145-187
CI=3.23


[188-204]:
1jlna_PU8_188-204
CI=0.22


[205-220]:
1jlna_PU8_205-220
CI=0.00


[221-232]:
1jlna_PU8_221-232
CI=0.00


[233-281]:
1jlna_PU8_233-281
CI=2.34


[282-297 ]:
1jlna_PU8_282-297
CI=0.00


Level 9
PU
Molecule needs Java 1.4 Structure


[1-17]:
1jlna_PU9_1-17
CI=0.32


[18-45]:
1jlna_PU9_18-45
CI=0.26


[46-66]:
1jlna_PU9_46-66
CI=0.27


[67-88]:
1jlna_PU9_67-88
CI=1.10


[89-107]:
1jlna_PU9_89-107
CI=2.88


[108-126]:
1jlna_PU9_108-126
CI=0.19


[127-144]:
1jlna_PU9_127-144
CI=1.13


[145-161]:
1jlna_PU9_145-161
CI=1.84


[162-187]:
1jlna_PU9_162-187
CI=2.28


[188-204]:
1jlna_PU9_188-204
CI=0.22


[205-220]:
1jlna_PU9_205-220
CI=0.00


[221-232]:
1jlna_PU9_221-232
CI=0.00


[233-281]:
1jlna_PU9_233-281
CI=2.34


[282-297 ]:
1jlna_PU9_282-297
CI=0.00


Final level 10

PU
Molecule needs Java 1.4 Structure


[1-17]:
1jlna_PU_1-17
CI=0.32


[18-45]:
1jlna_PU_18-45
CI=0.26


[46-66]:
1jlna_PU_46-66
CI=0.27


[67-88]:
1jlna_PU_67-88
CI=1.10


[89-107]:
1jlna_PU_89-107
CI=2.88


[108-126]:
1jlna_PU_108-126
CI=0.19


[127-144]:
1jlna_PU_127-144
CI=1.13


[145-161]:
1jlna_PU_145-161
CI=1.84


[162-187]:
1jlna_PU_162-187
CI=2.28


[188-204]:
1jlna_PU_188-204
CI=0.22


[205-220]:
1jlna_PU_205-220
CI=0.00


[221-232]:
1jlna_PU_221-232
CI=0.00


[233-256]:
1jlna_PU_233-256
CI=0.47


[257-281]:
1jlna_PU_257-281
CI=0.81


[282-297 ]:
1jlna_PU_282-297
CI=0.00