Protein Peeling

Results

announcement

19/01/2005 -new version
15/08/2005 -new help

Parameters choosen


R-value: 95

Minimal size of secondary structure: 8

Minimal size of protein unit: 16

Maximal size of protein unit: 0

Pruning tree ? No   CI cut-off:  0.2

Cut-off distance between atom: 8

Delta value in logistic function: 1.5



Hierarchical process of splitting



Tree
Contact Matrix



Visualisation of Protein units at all levels


Level 0
PU
Molecule needs Java 1.4 Structure


[1-103]:
1jmva_PU0_1-103
CI=3.95


[104-140 ]:
1jmva_PU0_104-140
CI=2.02


Level 1
PU
Molecule needs Java 1.4 Structure


[1-48]:
1jmva_PU1_1-48
CI=2.19


[49-71]:
1jmva_PU1_49-71
CI=0.97


[72-103]:
1jmva_PU1_72-103
CI=0.87


[104-140 ]:
1jmva_PU1_104-140
CI=2.02


Level 2
PU
Molecule needs Java 1.4 Structure


[1-30]:
1jmva_PU2_1-30
CI=0.99


[31-48]:
1jmva_PU2_31-48
CI=0.00


[49-71]:
1jmva_PU2_49-71
CI=0.97


[72-103]:
1jmva_PU2_72-103
CI=0.87


[104-140 ]:
1jmva_PU2_104-140
CI=2.02


Final level 3

PU
Molecule needs Java 1.4 Structure


[1-30]:
1jmva_PU_1-30
CI=0.99


[31-48]:
1jmva_PU_31-48
CI=0.00


[49-71]:
1jmva_PU_49-71
CI=0.97


[72-103]:
1jmva_PU_72-103
CI=0.87


[104-121]:
1jmva_PU_104-121
CI=0.20


[122-140 ]:
1jmva_PU_122-140
CI=0.19