Protein Peeling

Results

announcement

19/01/2005 -new version
15/08/2005 -new help

Parameters choosen


R-value: 95

Minimal size of secondary structure: 8

Minimal size of protein unit: 16

Maximal size of protein unit: 0

Pruning tree ? No   CI cut-off:  0.2

Cut-off distance between atom: 8

Delta value in logistic function: 1.5



Hierarchical process of splitting



Tree
Contact Matrix



Visualisation of Protein units at all levels


Level 0
PU
Molecule needs Java 1.4 Structure


[1-20]:
1jnia_PU0_1-20
CI=0.20


[21-53]:
1jnia_PU0_21-53
CI=1.54


[54-62 ]:
1jnia_PU0_54-62
CI=0.00


Final level 1

PU
Molecule needs Java 1.4 Structure


[1-20]:
1jnia_PU_1-20
CI=0.20


[21-37]:
1jnia_PU_21-37
CI=0.87


[38-53]:
1jnia_PU_38-53
CI=0.74


[54-62 ]:
1jnia_PU_54-62
CI=0.00