Protein Peeling

Results

announcement

19/01/2005 -new version
15/08/2005 -new help

Parameters choosen


R-value: 95

Minimal size of secondary structure: 8

Minimal size of protein unit: 16

Maximal size of protein unit: 0

Pruning tree ? No   CI cut-off:  0.2

Cut-off distance between atom: 8

Delta value in logistic function: 1.5



Hierarchical process of splitting



Tree
Contact Matrix



Visualisation of Protein units at all levels


Level 0
PU
Molecule needs Java 1.4 Structure


[1-17]:
1jo0a_PU0_1-17
CI=0.00


[18-86]:
1jo0a_PU0_18-86
CI=3.15


[87-97 ]:
1jo0a_PU0_87-97
CI=0.32


Level 1
PU
Molecule needs Java 1.4 Structure


[1-17]:
1jo0a_PU1_1-17
CI=0.00


[18-50]:
1jo0a_PU1_18-50
CI=1.78


[51-86]:
1jo0a_PU1_51-86
CI=2.21


[87-97 ]:
1jo0a_PU1_87-97
CI=0.32


Level 2
PU
Molecule needs Java 1.4 Structure


[1-17]:
1jo0a_PU2_1-17
CI=0.00


[18-50]:
1jo0a_PU2_18-50
CI=1.78


[51-70]:
1jo0a_PU2_51-70
CI=0.36


[71-86]:
1jo0a_PU2_71-86
CI=2.32


[87-97 ]:
1jo0a_PU2_87-97
CI=0.32


Final level 3

PU
Molecule needs Java 1.4 Structure


[1-17]:
1jo0a_PU_1-17
CI=0.00


[18-34]:
1jo0a_PU_18-34
CI=0.31


[35-50]:
1jo0a_PU_35-50
CI=0.45


[51-70]:
1jo0a_PU_51-70
CI=0.36


[71-86]:
1jo0a_PU_71-86
CI=2.32


[87-97 ]:
1jo0a_PU_87-97
CI=0.32